Difference between revisions of "Amino acids"
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(an alanine-glyoxylate aminotransferase). | (an alanine-glyoxylate aminotransferase). | ||
<br> | <br> | ||
| + | |||
'''C = cysteine'''<br> | '''C = cysteine'''<br> | ||
<br> | <br> | ||
| + | |||
'''D = aspartic acid'''<br> | '''D = aspartic acid'''<br> | ||
<br> | <br> | ||
| + | |||
'''E = glutamic acid'''<br> | '''E = glutamic acid'''<br> | ||
<br> | <br> | ||
| + | |||
'''F = phenylalanine'''<br> | '''F = phenylalanine'''<br> | ||
<br> | <br> | ||
| + | |||
'''G = glycine'''<br> | '''G = glycine'''<br> | ||
Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44. | Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44. | ||
<br> | <br> | ||
| + | |||
'''H = histidine'''<br> | '''H = histidine'''<br> | ||
Appears to be complete. | Appears to be complete. | ||
<br> | <br> | ||
| + | |||
'''I = isoleucine'''<br> | '''I = isoleucine'''<br> | ||
<br> | <br> | ||
| + | |||
'''K = lysine'''<br> | '''K = lysine'''<br> | ||
<br> | <br> | ||
| + | |||
'''L = leucine'''<br> | '''L = leucine'''<br> | ||
<br> | <br> | ||
| + | |||
'''M = methionine'''<br> | '''M = methionine'''<br> | ||
<br> | <br> | ||
| + | |||
'''N = asparagine'''<br> | '''N = asparagine'''<br> | ||
Our organism appears to have no enzyme that makes L-aasparagine from L-aspartate (asparaginases). On the RAST spreadsheet, however, RAST calls an "asparagine family protein" in bps from 1139281-1140141. | Our organism appears to have no enzyme that makes L-aasparagine from L-aspartate (asparaginases). On the RAST spreadsheet, however, RAST calls an "asparagine family protein" in bps from 1139281-1140141. | ||
<br> | <br> | ||
| + | |||
'''P = proline'''<br> | '''P = proline'''<br> | ||
<br> | <br> | ||
| + | |||
'''Q = glutamine'''<br> | '''Q = glutamine'''<br> | ||
Appears to be fairly complete when compared with Haloarcula marismortui, with exceptions being a missing NAD synthase (EC 6.3.5.1), a carbamoyl-phosphate synthetase (EC 6.3.4.16). | Appears to be fairly complete when compared with Haloarcula marismortui, with exceptions being a missing NAD synthase (EC 6.3.5.1), a carbamoyl-phosphate synthetase (EC 6.3.4.16). | ||
<br> | <br> | ||
| + | |||
'''R = arginine'''<br> | '''R = arginine'''<br> | ||
<br> | <br> | ||
| + | |||
'''S = serine'''<br> | '''S = serine'''<br> | ||
Matches Haloarcula marismortui, except in RAST KEGG diagram, it appears to be missing enzyme 2.7.8.8, which is a CDP-diacylglycerol-serine O-phosphatidyltransferase. However, according to the RAST spreadsheet, there is a CDP-diacylglycerol-serine O-phosphatidyltransferase from bps 1440328-1439621. | Matches Haloarcula marismortui, except in RAST KEGG diagram, it appears to be missing enzyme 2.7.8.8, which is a CDP-diacylglycerol-serine O-phosphatidyltransferase. However, according to the RAST spreadsheet, there is a CDP-diacylglycerol-serine O-phosphatidyltransferase from bps 1440328-1439621. | ||
<br> | <br> | ||
| + | |||
'''T = threonine'''<br> | '''T = threonine'''<br> | ||
Appears to be complete. | Appears to be complete. | ||
<br> | <br> | ||
| + | |||
'''V = valine'''<br> | '''V = valine'''<br> | ||
<br> | <br> | ||
| + | |||
'''W = tryptophan'''<br> | '''W = tryptophan'''<br> | ||
<br> | <br> | ||
| + | |||
'''Y = tyrosine'''<br> | '''Y = tyrosine'''<br> | ||
<br> | <br> | ||
Revision as of 15:23, 6 November 2008
A = alanine
The RAST KEGG viewer says there is no way to convert between pyruvate and alanine, however, the RAST spreadsheet calls enzyme 2.6.1.44
(an alanine-glyoxylate aminotransferase).
C = cysteine
D = aspartic acid
E = glutamic acid
F = phenylalanine
G = glycine
Appears to be missing EC numbers 2.6.1.44 and 1.4.4.2. The RAST spreadsheet calls 2.6.1.44.
H = histidine
Appears to be complete.
I = isoleucine
K = lysine
L = leucine
M = methionine
N = asparagine
Our organism appears to have no enzyme that makes L-aasparagine from L-aspartate (asparaginases). On the RAST spreadsheet, however, RAST calls an "asparagine family protein" in bps from 1139281-1140141.
P = proline
Q = glutamine
Appears to be fairly complete when compared with Haloarcula marismortui, with exceptions being a missing NAD synthase (EC 6.3.5.1), a carbamoyl-phosphate synthetase (EC 6.3.4.16).
R = arginine
S = serine
Matches Haloarcula marismortui, except in RAST KEGG diagram, it appears to be missing enzyme 2.7.8.8, which is a CDP-diacylglycerol-serine O-phosphatidyltransferase. However, according to the RAST spreadsheet, there is a CDP-diacylglycerol-serine O-phosphatidyltransferase from bps 1440328-1439621.
T = threonine
Appears to be complete.
V = valine
W = tryptophan
Y = tyrosine
