Difference between revisions of "Shine Dalgarno Sequence Logo"

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>2500590728 HutaDRAFT_30940 16s rRNA 2397347..2398825(+) [Halorhabdus utahensis AX-2, DSM 12940]
 
>2500590728 HutaDRAFT_30940 16s rRNA 2397347..2398825(+) [Halorhabdus utahensis AX-2, DSM 12940]
−
TCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCAT
+
 
−
GCTAGTCGCACGGGTTTAGACCCGTGGCAAATAGCTCAGTAACACGTGGC
+
TCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTCGCACGGGTTTAGACCCGTGGCAAATAGCTCAGTAACACGTGGCCAAACTACCCTGTGGACGGAAATAACCTCGGGAAACTGAGGCTAATGTCCGATACGACTCGCCAGCTGGAGTGCGGCGAGTCGGAAACGTTGCGGCGCCACAGGATGTGGCTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACAGGTCATGAGAGTGAGAGCCTGGAGACGGTATCTGAGACAAGATGCCGGGCCCTACGGGGCGCAGCAGGCGCGAAACCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGTCCTCGCTTTTGTGTACCGTAAGGTGGTACAGGAATAAGGGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGCTATTATTGGGCCTAAAGCGTCCGTAGCCGGCCAGACAAGTCTGTTGGGAAATCCACGCGCTCAACGCGTGGACGTCCGGCGGAAACTGTCTGGCTTGGGGCCGGAAGATCTGAGGGGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGAAAGACGGACCCGACGGTGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAACGATGCTCGCTAGGTGTGCCGCAGGCTACGAGCCTGCGCTGTGCCGTAGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCACCGACAATGTGCAGTGAAGGTCAGGTTGATGACCTTACTGGAGCCATTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACCCGCACTCTTAGTTGCCAGCAGCATCTTGCGATGGCTGGGTACACTAGGAGGACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGCAACGGTAGGTCAGTATGCCCCGAATGTGCTGGGCGACACGCGGGCTACAATGGCCGGGACAGTGGGACGCCAGTCCGAGAGGACGCGCTAATCCCCGAAACCCGGTCGTAGTTCGGATTGAGGGCTGAAACCCGCCCTCATGAAGCTGGATTCGGTAGTAATCGCGTGTCAGAAGCGCGCGGTGAATCCGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCGTCATGCGACGGTCAAATCTGGGCTCCGCAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGAT'''CACCTCC'''TAACGATCGG
−
CAAACTACCCTGTGGACGGAAATAACCTCGGGAAACTGAGGCTAATGTCC
 
−
GATACGACTCGCCAGCTGGAGTGCGGCGAGTCGGAAACGTTGCGGCGCCA
 
−
CAGGATGTGGCTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCG
 
−
TGCCCATAATCGGTACAGGTCATGAGAGTGAGAGCCTGGAGACGGTATCT
 
−
GAGACAAGATGCCGGGCCCTACGGGGCGCAGCAGGCGCGAAACCTTTACA
 
−
CTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGTCCT
 
−
CGCTTTTGTGTACCGTAAGGTGGTACAGGAATAAGGGCTGGGCAAGACCG
 
−
GTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGCTATTAT
 
−
TGGGCCTAAAGCGTCCGTAGCCGGCCAGACAAGTCTGTTGGGAAATCCAC
 
−
GCGCTCAACGCGTGGACGTCCGGCGGAAACTGTCTGGCTTGGGGCCGGAA
 
−
GATCTGAGGGGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACG
 
−
GACCGCCGGTGGCGAAAGCGCCTCAGAAAGACGGACCCGACGGTGAGGGA
 
−
CGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGT
 
−
AAACGATGCTCGCTAGGTGTGCCGCAGGCTACGAGCCTGCGCTGTGCCGT
 
−
AGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGGATGAAA
 
−
CTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTA
 
−
ATTGGACTCAACGCCGGACATCTCACCAGCACCGACAATGTGCAGTGAAG
 
−
GTCAGGTTGATGACCTTACTGGAGCCATTGAGAGGAGGTGCATGGCCGCC
 
−
GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACC
 
−
CGCACTCTTAGTTGCCAGCAGCATCTTGCGATGGCTGGGTACACTAGGAG
 
−
GACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGCAACGGTAGGTCAGTAT
 
−
GCCCCGAATGTGCTGGGCGACACGCGGGCTACAATGGCCGGGACAGTGGG
 
−
ACGCCAGTCCGAGAGGACGCGCTAATCCCCGAAACCCGGTCGTAGTTCGG
 
−
ATTGAGGGCTGAAACCCGCCCTCATGAAGCTGGATTCGGTAGTAATCGCG
 
−
TGTCAGAAGCGCGCGGTGAATCCGTCCCTGCTCCTTGCACACACCGCCCG
 
−
TCAAAGCACCCGAGTGGGGTCCGGATGAGGCCGTCATGCGACGGTCAAAT
 
−
CTGGGCTCCGCAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAAT
 
−
CTGCGGCTGGAT'''CACCTCC'''TAACGATCGG
 
  
 
Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 270 <font color="red">'''JGI'''</font> annotated genes
 
Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 270 <font color="red">'''JGI'''</font> annotated genes

Revision as of 16:24, 20 November 2008

PatterFreq.png

>2500590728 HutaDRAFT_30940 16s rRNA 2397347..2398825(+) [Halorhabdus utahensis AX-2, DSM 12940]

TCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTCGCACGGGTTTAGACCCGTGGCAAATAGCTCAGTAACACGTGGCCAAACTACCCTGTGGACGGAAATAACCTCGGGAAACTGAGGCTAATGTCCGATACGACTCGCCAGCTGGAGTGCGGCGAGTCGGAAACGTTGCGGCGCCACAGGATGTGGCTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACAGGTCATGAGAGTGAGAGCCTGGAGACGGTATCTGAGACAAGATGCCGGGCCCTACGGGGCGCAGCAGGCGCGAAACCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGTCCTCGCTTTTGTGTACCGTAAGGTGGTACAGGAATAAGGGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGCTATTATTGGGCCTAAAGCGTCCGTAGCCGGCCAGACAAGTCTGTTGGGAAATCCACGCGCTCAACGCGTGGACGTCCGGCGGAAACTGTCTGGCTTGGGGCCGGAAGATCTGAGGGGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGAAAGACGGACCCGACGGTGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAACGATGCTCGCTAGGTGTGCCGCAGGCTACGAGCCTGCGCTGTGCCGTAGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCACCGACAATGTGCAGTGAAGGTCAGGTTGATGACCTTACTGGAGCCATTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACCCGCACTCTTAGTTGCCAGCAGCATCTTGCGATGGCTGGGTACACTAGGAGGACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGCAACGGTAGGTCAGTATGCCCCGAATGTGCTGGGCGACACGCGGGCTACAATGGCCGGGACAGTGGGACGCCAGTCCGAGAGGACGCGCTAATCCCCGAAACCCGGTCGTAGTTCGGATTGAGGGCTGAAACCCGCCCTCATGAAGCTGGATTCGGTAGTAATCGCGTGTCAGAAGCGCGCGGTGAATCCGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCGTCATGCGACGGTCAAATCTGGGCTCCGCAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCTAACGATCGG

Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 270 JGI annotated genes

JgiSC.png


Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 284 Manatee annotated genes

ManateeSC.png


Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 238 Rast annotated genes

RastSC.png


SpacerLengths.png

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