Difference between revisions of "Shine Dalgarno Sequence Logo"
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>2500590728 HutaDRAFT_30940 16s rRNA 2397347..2398825(+) [Halorhabdus utahensis AX-2, DSM 12940] | >2500590728 HutaDRAFT_30940 16s rRNA 2397347..2398825(+) [Halorhabdus utahensis AX-2, DSM 12940] | ||
| − | + | <pre> | |
| − | TCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTCGCACGGGTTTAGACCCGTGGCAAATAGCTCAGTAACACGTGGCCAAACTACCCTGTGGACGGAAATAACCTCGGGAAACTGAGGCTAATGTCCGATACGACTCGCCAGCTGGAGTGCGGCGAGTCGGAAACGTTGCGGCGCCACAGGATGTGGCTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACAGGTCATGAGAGTGAGAGCCTGGAGACGGTATCTGAGACAAGATGCCGGGCCCTACGGGGCGCAGCAGGCGCGAAACCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGTCCTCGCTTTTGTGTACCGTAAGGTGGTACAGGAATAAGGGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGCTATTATTGGGCCTAAAGCGTCCGTAGCCGGCCAGACAAGTCTGTTGGGAAATCCACGCGCTCAACGCGTGGACGTCCGGCGGAAACTGTCTGGCTTGGGGCCGGAAGATCTGAGGGGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGAAAGACGGACCCGACGGTGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAACGATGCTCGCTAGGTGTGCCGCAGGCTACGAGCCTGCGCTGTGCCGTAGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCACCGACAATGTGCAGTGAAGGTCAGGTTGATGACCTTACTGGAGCCATTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACCCGCACTCTTAGTTGCCAGCAGCATCTTGCGATGGCTGGGTACACTAGGAGGACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGCAACGGTAGGTCAGTATGCCCCGAATGTGCTGGGCGACACGCGGGCTACAATGGCCGGGACAGTGGGACGCCAGTCCGAGAGGACGCGCTAATCCCCGAAACCCGGTCGTAGTTCGGATTGAGGGCTGAAACCCGCCCTCATGAAGCTGGATTCGGTAGTAATCGCGTGTCAGAAGCGCGCGGTGAATCCGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCGTCATGCGACGGTCAAATCTGGGCTCCGCAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGAT'''CACCTCC'''TAACGATCGG | + | TCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTCGCACGGGTTTAGACCCGTGGCAAATAGCTCAGTAACACGTGGCCAAACTACCCTGTGGACGGAAATAACCTCGGGAAACTGAGGCTAATGTCCGATACGACTCGCCAGCTGGAGTGCGGCGAGTCGGAAACGTTGCGGCGCCACAGGATGTGGCTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACAGGTCATGAGAGTGAGAGCCTGGAGACGGTATCTGAGACAAGATGCCGGGCCCTACGGGGCGCAGCAGGCGCGAAACCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGTCCTCGCTTTTGTGTACCGTAAGGTGGTACAGGAATAAGGGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGCTATTATTGGGCCTAAAGCGTCCGTAGCCGGCCAGACAAGTCTGTTGGGAAATCCACGCGCTCAACGCGTGGACGTCCGGCGGAAACTGTCTGGCTTGGGGCCGGAAGATCTGAGGGGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGAAAGACGGACCCGACGGTGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAACGATGCTCGCTAGGTGTGCCGCAGGCTACGAGCCTGCGCTGTGCCGTAGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCACCGACAATGTGCAGTGAAGGTCAGGTTGATGACCTTACTGGAGCCATTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACCCGCACTCTTAGTTGCCAGCAGCATCTTGCGATGGCTGGGTACACTAGGAGGACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGCAACGGTAGGTCAGTATGCCCCGAATGTGCTGGGCGACACGCGGGCTACAATGGCCGGGACAGTGGGACGCCAGTCCGAGAGGACGCGCTAATCCCCGAAACCCGGTCGTAGTTCGGATTGAGGGCTGAAACCCGCCCTCATGAAGCTGGATTCGGTAGTAATCGCGTGTCAGAAGCGCGCGGTGAATCCGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCGTCATGCGACGGTCAAATCTGGGCTCCGCAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGAT'''CACCTCC'''TAACGATCGG</pre> |
| − | |||
Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 270 <font color="red">'''JGI'''</font> annotated genes | Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 270 <font color="red">'''JGI'''</font> annotated genes | ||
Revision as of 16:25, 20 November 2008
>2500590728 HutaDRAFT_30940 16s rRNA 2397347..2398825(+) [Halorhabdus utahensis AX-2, DSM 12940]
TCCGGTTGATCCTGCCGGAGGCCATTGCTATCGGAGTCCGATTTAGCCATGCTAGTCGCACGGGTTTAGACCCGTGGCAAATAGCTCAGTAACACGTGGCCAAACTACCCTGTGGACGGAAATAACCTCGGGAAACTGAGGCTAATGTCCGATACGACTCGCCAGCTGGAGTGCGGCGAGTCGGAAACGTTGCGGCGCCACAGGATGTGGCTGCGGCCGATTAGGTAGACGGTGGGGTAACGGCCCACCGTGCCCATAATCGGTACAGGTCATGAGAGTGAGAGCCTGGAGACGGTATCTGAGACAAGATGCCGGGCCCTACGGGGCGCAGCAGGCGCGAAACCTTTACACTGCACGACAGTGCGATAGGGGGACTCCGAGTGCGAGGGCATATAGTCCTCGCTTTTGTGTACCGTAAGGTGGTACAGGAATAAGGGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCCCGAGTGATGGCCGCTATTATTGGGCCTAAAGCGTCCGTAGCCGGCCAGACAAGTCTGTTGGGAAATCCACGCGCTCAACGCGTGGACGTCCGGCGGAAACTGTCTGGCTTGGGGCCGGAAGATCTGAGGGGTACGTCCGGGGTAGGAGTGAAATCCCGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGAAAGACGGACCCGACGGTGAGGGACGAAAGCTAGGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTAGCTGTAAACGATGCTCGCTAGGTGTGCCGCAGGCTACGAGCCTGCGCTGTGCCGTAGGGAAGCCGTGAAGCGAGCCGCCTGGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCACCGACAATGTGCAGTGAAGGTCAGGTTGATGACCTTACTGGAGCCATTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACCCGCACTCTTAGTTGCCAGCAGCATCTTGCGATGGCTGGGTACACTAGGAGGACTGCCGCTGCCAAAGCGGAGGAAGGAACGGGCAACGGTAGGTCAGTATGCCCCGAATGTGCTGGGCGACACGCGGGCTACAATGGCCGGGACAGTGGGACGCCAGTCCGAGAGGACGCGCTAATCCCCGAAACCCGGTCGTAGTTCGGATTGAGGGCTGAAACCCGCCCTCATGAAGCTGGATTCGGTAGTAATCGCGTGTCAGAAGCGCGCGGTGAATCCGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGGGGTCCGGATGAGGCCGTCATGCGACGGTCAAATCTGGGCTCCGCAAGGGGGCTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGAT'''CACCTCC'''TAACGATCGG
Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 270 JGI annotated genes
Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 284 Manatee annotated genes
Shina Dalgarno Sequence logo generated by comparing 25bp upstream of 238 Rast annotated genes
