Difference between revisions of "Missouri Western/Davidson iGEM2009"
From GcatWiki
| Line 9: | Line 9: | ||
We need to learn more about these topics: | We need to learn more about these topics: | ||
<center>'''Biology-based'''</center> | <center>'''Biology-based'''</center> | ||
| + | |||
| + | #[[How is msDNA normally produced?]] Olivia/Alyndria | ||
| + | #[[How many copies are carried per cell?]] Alyndria | ||
| + | #[[What role can physical modeling of protein structure play in our project?]] Romina | ||
| + | #[[What role can physical modeling of proteins play in our project? Eric Sawyer]] | ||
| + | #[[What other cool reporters are there? (Discrete On/Off or Continuous) Bryce Szczepanik]] | ||
| + | #[[Can we use promoter strength/opposite directions to subtract? Clif Davis]] | ||
#[[What is msDNA?]] | #[[What is msDNA?]] | ||
| − | #[[ | + | #[[Can we use suppressor tRNAs to encode logical operators (suppressor suppressor logic, SSL)?]] |
#[[How is msDNA stored in E. coli?]] Olivia | #[[How is msDNA stored in E. coli?]] Olivia | ||
| − | |||
#[[What is the sequence of bacterial reverse transcriptase and can we clone that gene?]] Shamita | #[[What is the sequence of bacterial reverse transcriptase and can we clone that gene?]] Shamita | ||
#[[Can we redesign the normal msDNA pathway to produce new segments of DNA of our choosing?]] All | #[[Can we redesign the normal msDNA pathway to produce new segments of DNA of our choosing?]] All | ||
| − | |||
#[[What are other available reverse transcriptases?]] Leland | #[[What are other available reverse transcriptases?]] Leland | ||
#[[Can we solve a 3-SAT problem with supressor logic?]] | #[[Can we solve a 3-SAT problem with supressor logic?]] | ||
| − | |||
#[[What other math problems (e.g. NP- complete) are accessible to us? Siya Sun]] | #[[What other math problems (e.g. NP- complete) are accessible to us? Siya Sun]] | ||
#[[What is the relationship between 3-SAT and map coloring? Ashley Schnoor]] | #[[What is the relationship between 3-SAT and map coloring? Ashley Schnoor]] | ||
| − | |||
#[[What activators are there that turn on a promoter without any help?]] | #[[What activators are there that turn on a promoter without any help?]] | ||
| − | |||
| − | |||
#[[Can we use protein interactions to compute? (Post-translation, proteases, quaternary structure) Will Vernon]] | #[[Can we use protein interactions to compute? (Post-translation, proteases, quaternary structure) Will Vernon]] | ||
#[[Could we do something with clocks/counting?]] | #[[Could we do something with clocks/counting?]] | ||
Revision as of 13:55, 14 May 2009
This space will be used starting April, 2009 for brainstorming and a shared whiteboard space.
Davidson Lab Protocols
MWSU Lab Protocols
BioMath Connections Page
GCAT-alog Freezer Stocks
We need to learn more about these topics:
- How is msDNA normally produced? Olivia/Alyndria
- How many copies are carried per cell? Alyndria
- What role can physical modeling of protein structure play in our project? Romina
- What role can physical modeling of proteins play in our project? Eric Sawyer
- What other cool reporters are there? (Discrete On/Off or Continuous) Bryce Szczepanik
- Can we use promoter strength/opposite directions to subtract? Clif Davis
- What is msDNA?
- Can we use suppressor tRNAs to encode logical operators (suppressor suppressor logic, SSL)?
- How is msDNA stored in E. coli? Olivia
- What is the sequence of bacterial reverse transcriptase and can we clone that gene? Shamita
- Can we redesign the normal msDNA pathway to produce new segments of DNA of our choosing? All
- What are other available reverse transcriptases? Leland
- Can we solve a 3-SAT problem with supressor logic?
- What other math problems (e.g. NP- complete) are accessible to us? Siya Sun
- What is the relationship between 3-SAT and map coloring? Ashley Schnoor
- What activators are there that turn on a promoter without any help?
- Can we use protein interactions to compute? (Post-translation, proteases, quaternary structure) Will Vernon
- Could we do something with clocks/counting?
- Could we have/use multiple synthetic organelles in a cell?
- What ideas from previous iGEM teams are useful to us?
- What interesting challenges or problems does origami offer?
- Can we produce a series of increasingly difficult goals that might be possible to produce in the lab?
- What has been done before and how can we improve upon that?
- We can perform some pilot experiments using synthesized DNA and later switch to msDNA (maybe).
- Can we address the Boolean Satisfiability (SAT) problem with a bacterial computer?
- How has 3SAT been addressed with a DNA computer? Can we use those methods?
- Can we get bacteria to solve a problem large enough to challenge a person?
- Can we get bacteria to solve a problem large enough to challenge a computer (probably not, but it is fun to think about)?
- What are some linear algebra applications for DNA origami?
- How can we use origami to solve 3-SAT problems?
