Difference between revisions of "Protein of unknown function ("
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| − | = | + | =Conserved hypothetical protein TIGR00162 (ID 644030738) [http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644030738 644030738]= |
=Blastn Search= | =Blastn Search= | ||
Revision as of 12:10, 8 September 2009
Contents
Conserved hypothetical protein TIGR00162 (ID 644030738) 644030738
Blastn Search
Megablast and blastn gave no results other than the source genome (Halomicrobium mukohataei). When I ran the blast searching for more dissimilar (discontiguous megablast), the results were not helpful - they were either complete genomes or not statistically significant.
Blastx Search
This search provided a number of results, however many were hypothetical proteins. A number of results were cupin conserved barrel domain proteins, however I was unable to determine if any of these results were relevant.
GC Content
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene.
