Difference between revisions of "Protein of unknown function ("
From GcatWiki
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| − | =Conserved hypothetical protein TIGR00162 | + | =Conserved hypothetical protein TIGR00162 [http://img.jgi.doe.gov/cgi-bin/geba/main.cgi?section=GeneDetail&page=geneDetail&gene_oid=644030738 644030738]= |
| − | = | + | =Blast= |
| − | Megablast | + | Megablast confirmed that the sequence is 100% identical to one in (''Halomicrobium mukohataei''). Blast also showed that the microbe (''Halorhabdus utahensis'') has a sequence that is 100% identical to this particular gene, and that (''Saccharopolyspora erythraea'') has two identified genes with sequences similar to those found within this sequence (shown below). |
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| − | |||
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=GC Content= | =GC Content= | ||
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene. | The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene. | ||
Revision as of 12:28, 8 September 2009
Conserved hypothetical protein TIGR00162 644030738
Blast
Megablast confirmed that the sequence is 100% identical to one in (Halomicrobium mukohataei). Blast also showed that the microbe (Halorhabdus utahensis) has a sequence that is 100% identical to this particular gene, and that (Saccharopolyspora erythraea) has two identified genes with sequences similar to those found within this sequence (shown below).
GC Content
The GC content for this gene is 70% and the GC content for our species' genome is 66%. These percentages are fairly similar, thus ruling out the possibility the possibility that this is an outside gene. There may however exist paralogs and orthologs to this gene.
