File:Jung Pathway.jpg

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Image title	<title>An outline of flowering pathway showing soybean orthologues for Arabidopsis flowering genes.</title><p>Arabidopsis flowering pathway depicted by Higgins<italic>et al</italic>. (2010)<xref ref-type="bibr" rid="pone.0038250-Higgins1">[12]</xref>was adapted for this study. Arabidopsis gene symbols are shown in upper box of each node along with the corresponding OG ID and the total number of soybean genes in the same OG. Only the soybean genes that are closer to the Arabidopsis flowering genes in each OG are listed in each node. Arabidopsis genes in grey shades are those that are not assigned with putative soybean orthologues. However, based on BLAST analysis these genes still have homologous soybean genes, the best matching soybean gene in BLAST analysis is shown below these genes. Dashed-lines were used for the arrows or T-bars that involve grey shades. Soybean genes marked with * are those that share the same clade with Arabidopsis genes but have not been investigated so far as flowering genes. OG IDs starting with‘OG5_AT’ are arbitrarily generated in this study and do not exist in OrthoMCL 5.0 database. Other conventions are same as those used in the<xref ref-type="fig" rid="pone-0038250-g001">Figure 1A</xref>by Higgins<italic>et al</italic>. (2010)<xref ref-type="bibr" rid="pone.0038250-Higgins1">[12]</xref>. Arrows show promoting effects, T-bars show repressing effects. Environmental cues are shown as lower case letters in square boxes;‘v’ is extended cold (vernalization); ‘ld’ is long days; ‘sd’ is short days; ‘am’ is ambient (non-vernalizing) temperature. Genes are shown in italics and proteins in non-italics in ovals. ‘Pfr’ indicates P<sub>fr</sub>phytochrome signaling. Arabidopsis genes assigned to specific pathways are color-coded (photoperiod pathway in green, vernalization in blue and autonomous pathway in purple). Flowering pathway integrators are shown in red. Triple headed arrows indicate activation by red or blue light.</p>
Copyright holder	Creative Commons Attribution License
Date(s)	5 June 2012
Publisher	Public Library of Science
Short title	Figure 2
Source	info:doi/10.1371/journal.pone.0038250
Identifier	info:doi/10.1371/journal.pone.0038250.g002
IIM version	2