DM Notes 2.18.16

Dr. Campbell and Dr. Heyer's Progress: Looking at heat map. They had been trying to adjust so that Euclidean distance isn't what determines correlation (can be different magnitudes, but still correlated). Now it's measured by correlation.

• Got rid of scale, but gave it absolute values. Yields about 2 horizontal rows (blue figure).
• But, when they eliminated Euclidean distance, first attempt yielded large red box with two rows showing other coloring. Changed coloring to see on normalized scale. p <=.01
• Code results are online under 2.18 (Dr. C and Dr. H results). The code makes CSVs with gene names. Working on 'if I select one gene, what genes are closely related to that one?' CSV has 28 genes.
• Contigs on that list are good candidates to pursue further.

Blast2GO: FASTA sequences->NCBI->GO annotations

Intestine folk: working on checking samples to see if they're good

Liver folk: working on checking liver samples

Our team: Working with map_to_GO script today.

Back to home Dylan Maghini