Hypothetical Protein 644029933 (Olivia Ho-Shing)

I randomly chose a protein with no predicted function: 644029933 hypothetical protein

In order to search for some possible function I tried using:

1. BLASTn
2. BLASTp
3. Kyte-Doolittle Plot
4. PREDATOR

BLASTn and BLASTp

The nucleotide sequence for this gene does have a start codon (ATG) and stop codon (TGA) defined. The BLASTn hits for the nucleotide sequence, other than a perfect alignment with itself (Halomicrobium mukohataei complete genome), returned hits with poor Query coverage (<10%) and unreliable E-values (>0.05).

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For the BLASTp hits, there were several hits for a monooxygenase protein, but the E-values were very unreliable.

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File:Hyp-blastp-align

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Kyte-Doolittle Plot

Kyte Doolittle plots

PREDATOR

a monooxygenase from the BLASTp hits.