Genome Assembly (gass)

• Need AJAX http://stackoverflow.com/questions/3946349/preventing-a-504-gateway-timeout-with-huge-php-script
  • AJAX tutorial http://www.softwaredeveloper.com/features/quality-ajax-resources-tutorials-082107/
  • http://site.ebrary.com/lib/davidson/docDetail.action?docID=10318128
• http://www.cheetahtemplate.org/index.html - cheetah = fast template generation for python
• http://davidderiso.com/post/6168199987 - example of using JQuery (type of AJAX???) and python
• http://forum.jquery.com/topic/ajax-partial-response
• http://www.ape-project.org/ - force partical output.

At the end, may want to rework site with Django-1.3

• Need to make the mira process a background task. (http://support.dataaccess.com/Forums/showthread.php?40971-How-to-avoid-timeout-when-the-process-of-a-call-takes-to-long-time)

This is what I need to do

• http://stackoverflow.com/questions/89228/how-to-call-external-command-in-python#2251026

• http://thraxil.org/users/anders/posts/2008/03/13/Subprocess-Hanging-PIPE-is-your-enemy/
• http://www.popekim.com/2008/12/never-use-pipe-with-python-popen.html

General List of 454 adaptors that should be screened in vector stage...

• http://seqanswers.com/forums/showthread.php?t=2698
• http://www.dkfz.de/gpcf/426.html