Difference between revisions of "Synthetic Biology Network Research"
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Over the next 14 weeks, we will read a series of papers. We have chosen some to help us get started, but as the semester progresses, you will take the lead in identifying papers. Some of these papers will be easy for you, but others will be more difficult. We will work as a group to understand what is going on. In all cases, we will use these papers to help us frame a research project that will be conducted this summer by 8 Davidson students. | Over the next 14 weeks, we will read a series of papers. We have chosen some to help us get started, but as the semester progresses, you will take the lead in identifying papers. Some of these papers will be easy for you, but others will be more difficult. We will work as a group to understand what is going on. In all cases, we will use these papers to help us frame a research project that will be conducted this summer by 8 Davidson students. | ||
| − | Some possible papers | + | <center>Some possible papers</center> |
| − | * Information Transduction Capacity of Noisy Biochemical Signaling Networks<br> | + | * '''The creativity crisis'''. <br> |
| + | Po Bronson and Ashley Merryman <br> | ||
| + | Newsweek. July 19, 2010. page 44. | ||
| + | |||
| + | * '''Information Transduction Capacity of Noisy Biochemical Signaling Networks'''<br> | ||
Raymond Cheong, Alex Rhee, Chiaochun Joanne Wang, Ilya Nemenman, Andre Levchenko<br> | Raymond Cheong, Alex Rhee, Chiaochun Joanne Wang, Ilya Nemenman, Andre Levchenko<br> | ||
Science. Vol. 334, page 354. | Science. Vol. 334, page 354. | ||
| − | * Synthetic Biology: Regulating Industry Uses of New Biotechnologies<br> | + | * '''Synthetic Biology: Regulating Industry Uses of New Biotechnologies'''<br> |
Brent Erickson, Rina Singh, Paul Winters<br> | Brent Erickson, Rina Singh, Paul Winters<br> | ||
Science. Vol. 333, page 1254. | Science. Vol. 333, page 1254. | ||
| − | * Synthetic Biology: Integrated Gene Circuits <br> | + | * '''Synthetic Biology: Integrated Gene Circuits''' <br> |
Nagarajan Nandagopal and Michael B. Elowitz<br> | Nagarajan Nandagopal and Michael B. Elowitz<br> | ||
Science. Vol. 333, page 1244. | Science. Vol. 333, page 1244. | ||
| − | * Synthetic biology: applications come of age<br> | + | * '''Synthetic biology: applications come of age'''<br> |
Ahmad S. Khalil* and James J. Collins<br> | Ahmad S. Khalil* and James J. Collins<br> | ||
Nature Review Genetics. Vol. 11. page 367. | Nature Review Genetics. Vol. 11. page 367. | ||
| − | * Five hard truths for synthetic biology. <br> | + | * '''Five hard truths for synthetic biology'''. <br> |
Roberta Kwok<br> | Roberta Kwok<br> | ||
Nature. Vol. 463. page 288. | Nature. Vol. 463. page 288. | ||
| − | * Controllability of complex networks<br> | + | * '''Controllability of complex networks'''<br> |
Yang-Yu Liu1,2, Jean-Jacques Slotine3,4 & Albert-La ́szlo ́ Baraba ́si<br> | Yang-Yu Liu1,2, Jean-Jacques Slotine3,4 & Albert-La ́szlo ́ Baraba ́si<br> | ||
Nature. Vol. 473. page 167. | Nature. Vol. 473. page 167. | ||
Revision as of 22:31, 16 January 2012
This page is designed as a community page for students at MWSU and Davidson College who are using synthetic biology to learn more about graph theory and network topology.
Davidson College
Our first meeting will be on Thursday, January 19, 2012. We will meet at 11 am (the common hour) in the Think Tank in the back of Belk computer lab.
We will start slowly with some introductory activities and a brief discussion of some news stories from the recent issue in Science that focused on synthetic biology. Read these pieces:
- The Allure of Synthetic Biology
- The Life Hacker
- Algae's Second Try
- A Lab of Their Own
- Visions of Synthetic Biology
Be ready to discuss these stories in general. What did you learn? What surprised you? What felt familiar?
Over the next 14 weeks, we will read a series of papers. We have chosen some to help us get started, but as the semester progresses, you will take the lead in identifying papers. Some of these papers will be easy for you, but others will be more difficult. We will work as a group to understand what is going on. In all cases, we will use these papers to help us frame a research project that will be conducted this summer by 8 Davidson students.
- The creativity crisis.
Po Bronson and Ashley Merryman
Newsweek. July 19, 2010. page 44.
- Information Transduction Capacity of Noisy Biochemical Signaling Networks
Raymond Cheong, Alex Rhee, Chiaochun Joanne Wang, Ilya Nemenman, Andre Levchenko
Science. Vol. 334, page 354.
- Synthetic Biology: Regulating Industry Uses of New Biotechnologies
Brent Erickson, Rina Singh, Paul Winters
Science. Vol. 333, page 1254.
- Synthetic Biology: Integrated Gene Circuits
Nagarajan Nandagopal and Michael B. Elowitz
Science. Vol. 333, page 1244.
- Synthetic biology: applications come of age
Ahmad S. Khalil* and James J. Collins
Nature Review Genetics. Vol. 11. page 367.
- Five hard truths for synthetic biology.
Roberta Kwok
Nature. Vol. 463. page 288.
- Controllability of complex networks
Yang-Yu Liu1,2, Jean-Jacques Slotine3,4 & Albert-La ́szlo ́ Baraba ́si
Nature. Vol. 473. page 167.
