Server at Davidson College
You have discovered the web server for the Genome Consortium for Active Teaching (GCAT) at Davidson College. This provides students and faculty unparalleled capacity and access. Generation I of the server was launched August 7, 2003 and Generation II was launched January 1, 2010. Soon, there will be a lot more on these pages.
GCAT-alog:
online catalog of freezer stocks
The
Oligator: chooses oligos for a DNA sequence greater than 22
bp, removes BioBrick restriction sites, adds BioBrick ends, and adds
Golden Gate assembly sticky ends
GGAJET
:Golden Gate Assembly Junction Evaluative Tool
Prime
Time Primer Designer :A Golden Gate Assembly Tool
REmbedder: embeds restriction enzyme recognition sequences in a protein while minimizing
amino acid changes and maximizing BLOSUM100 score
The
WiserOptimizer: a split site optimization tool for Golden Gate
Assembly
The
Loligator: processes oligos for 20 �L boiled and cooled oligos
The
Success-O-Rater: determines the number of trials needed to
find a successful sample
PCR
Primer Design: adds BioBrick ends to an input DNA sequence and
designs PCR primers
Optimal
Agarose Concentration: selects the optimum percent agarose gel
concentration for a given length of dsDNA
Lab
Protocols: Davidson Protocols for the 2010 iGem Project
Genomics Concentration, an interdisciplinary concentration with research opportunities for undergraduates