Difference between revisions of "Archaeal BJ1 Virus Hit from Spacer 2 in Crispr One: Blast Alignments to Other Halophiles"

Revision as of 16:39, 17 November 2009

What does this virus primarily attack? (Blasted the virus against nr/nt database)

Infects other halophiles, other bacteria and even other viruses

Blastn Alignment: Query= viral (Accession Number: AM419438.1) and Subject=species of choice

Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1

Lots of hits, the ones shown below have e-values less than 0.005, the next e-value not included is 0.018

Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers

Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364

Lots of hits, the ones shown have e-values less than 0.003, next e-value hit not shown is 0.011

Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers

Haloarula californiae= downloaded this sequence of the large contigs from the halophile genome site with the eight other species on it

Haloferax volcanii= CANNOT FIND ACCESSION NUMBER for whole genome!!!!!!!

Haloarcula sinaiiensis

Haloarcula vallismortis

Haloferax mediterranei

Haloferax mucosum

Haloferax sulfurifontis