Difference between revisions of "Archaeal BJ1 Virus Hit from Spacer 2 in Crispr One: Blast Alignments to Other Halophiles"
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| − | Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1 | + | '''Halorhabdus utahensis''': Accession number determined from NCBI: NC_013158.1 |
Lots of hits, the ones shown below have e-values less than 0.005, the next e-value not included is 0.018 | Lots of hits, the ones shown below have e-values less than 0.005, the next e-value not included is 0.018 | ||
Revision as of 16:40, 17 November 2009
What does this virus primarily attack? (Blasted the virus against nr/nt database)
Infects other halophiles, other bacteria and even other viruses
Blastn Alignment: Query= viral (Accession Number: AM419438.1) and Subject=species of choice
Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1
Lots of hits, the ones shown below have e-values less than 0.005, the next e-value not included is 0.018
Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers
Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364
Lots of hits, the ones shown have e-values less than 0.003, next e-value hit not shown is 0.011
Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers
Haloarula californiae= downloaded this sequence of the large contigs from the halophile genome site with the eight other species on it
Haloferax volcanii= CANNOT FIND ACCESSION NUMBER for whole genome!!!!!!!
Haloarcula sinaiiensis
Haloarcula vallismortis
Haloferax mediterranei
Haloferax mucosum
Haloferax sulfurifontis
