Difference between revisions of "Citrate Synthase"

Revision as of 02:34, 1 October 2009

I did a blastp search using our species' citrate synthase protein sequence.

The following halophiles were the tops hits and are accompanied by their basltp results:

Haloarcula marismortui citrate synthase protein sequence:

        1 msddlkkgle gvivaesels vidgdagklv yrgytiedla kgasyeevly llwhghlpnr
      61 delsefkqam vdargvdddv istvrqlaea denpmaalrt avsmlsafdp apedaeptde
     121 mvnletgrri takiptiiaa ftrirdgkep vephddldha anflymlnge epddvladvf
     181 dqalvlhadh glnastfsai ttastlsdvh savtsaigtl kgplhgganq dvmemlkevd
     241 daesdpldwv knaldegrrv sgfghrvynv kdprakilge rskelgeaag tlkwyemstt
     301 iedylmeekg lapnvdfysa styyqmgipi diytpifams rvggwvahvf eyiednrlir
     361 praryvgknt detefvplde r

Natronomonas pharaonis citrate synthase protein sequence:

       1 msdelkkgle gvlvaessls yidgdegklv yrgytiddla rnasfeevvy llwhgelpta
      61 delgsfkssm aeerhlddgv qqlvrelaea deepmaalrs ivsslsaydp dadaeptdea
     121 anlrkgrrit akiptalaaf sriregddpv epredldhaa nflymlngee pdevladtfd
     181 malvlhadhg lnastfsamv tsstladlha aitsavgals gslhgganqd vmeallelde
     241 sgkepvewve drldagervp gfghrvynvk dprakilsee sealgeaagt pqwhnystei
     301 eeylteekgl apnvdfysas tyyqmgipvd iytpifamsr vggwiahvle qyddnrlirp
     361 rgryvgpddr tvtpider

Halogeometricum borinquense citrate synthase protein sequence

       1 msddlkrgle gvlvaesels yidgdagqlv yrghtiedla rnasyeevvy llwhgelptr
      61 eqldefstam aeerelddav ldeiralaaa devpmaalrt ivsslsaydd dadhedvtdl
     121 ktnikkgcri takiptalaa fnrlrngedv vhprtdlsha anflymlnge epddvlaetf
     181 dmalvlhadh glnastfsam vtastlsdlh savtsaigtl agslhggana nvmrmlkeid
     241 esdkdptqwv edalesgrrv pgfghrvynv kdprakilge ksealgeaag dmkwydysva
     301 iedyigeekg lapnvdfysa styyqmgipv diytpifams rvggwiahvi eqfednrlir
     361 praryvgred qtftpider

Haloferax volcanii citrate synthase protein sequence

       1 msgelkrgle gvlvaeskls fidgdagqlv ycgydiedla rdasyeevly llwhgalptg
      61 eeldafsdel aahrdlddgv ldvarelaeq despmaalrt lvsamsayde sadfedvtdr
     121 evnlekakri takmpsvlaa yarfrrgddy vepdeslnha anflymlnge epnevlaetf
     181 dmalvlhadh glnastfsam vtsstlsdly savtsaigtl sgslhggana nvmrmlkdvd
     241 dsdmdptewv kdaldrgerv agfvhrvynv kdprakilga ksealgeaag dmkwyemsva
     301 ieeyigeekg lapnvdfysa styyqmgipi dlytpifavs raggwiahvl eqyednrlir
     361 prarytgekd ldftpvder

Haloquadratum walsbyi citrate synthase protein sequence

       1 msdevkrgle dvlvaesels cidgdagelv yrgysiedla qkasyeevvy llwhgrlptg
      61 delqsftdam ieertintgv yeqierlaaa despmaalrt ivstlsaydp dadaevidhe
     121 anarkarria aklptalaal qrcregndpv tprsdldhaa nflymlngse pdpvlaetfd
     181 malvlhadhg lnastfsakv tastlsdlhc aittavgtls gslhgganan vmrmlkevha
     241 sdadavtwie dalesgrrvp gfghrvynvk dprarilger skelaeaage mcwynysiti
     301 eeyiddhkgl apnvdfysas tyyqmgipid iytpifamar tagwiahtfe qydenrlirp
     361 raryvgneda tfksvekr

Halobacterium salinarum citrate synthase protein sequence:

       1 msdelkkgle dvlvaesdls fidgdagklv ycgyaiedla rtasyeevly llwhgdlptr
      61 seldafradm ashreidddv lalvenlaaa dadpmaalrt aasalsahdd taggsdpdda
     121 resgkritak lptivaaftr lrngddvvap rddlghaanf lymlngeapd dvladvfdqa
     181 lvlhadhgln astfsgmvta stladvhaav tsaigtlsgs lhggananvm rmlkevddsd
     241 kdplswvqda langervmgf ghrvynvkdp rahilserse elgaaagdtk wyemsvaied
     301 ymadekglap nvdfysasty yqmgipvdiy tpifamsrvg gwvghvleqy ddnrlirpra
     361 ryvgaedrds tplder

The following are salt-loving bacertia with top hits

Salinibacter ruber- Extremely halophilic, strictly aerobic, red-pigmented bacterium citrate synthase protein sequence

       1 mllcsektpa wagprgllqk rsradslnag lsqrpaclrp cpfgrdghav siplrlspht
      61 ffdmadqesv telttdkapi karglegvia leselssidg dkgqliyrgy dihdladhas
     121 feevvyllrh gelptqseld dfsshlrser alpapilnll retpadahpm avlrtavsal
     181 alydeeadtm eeaanhrkad rilaqiptii aafdrlrkdk epvapldhgs mahnflymln
     241 gekpgaaaed tfdvclvlha dhglnastft srvigstlsd mysavsgsvg alkgrlhgga
     301 nqevmrmlld idekgadpts yirdrldade rvmgfghrvy ntmdpraail rtmvkelsee
     361 agdmkwykyt tkihetmtee tgidpnvdff sgptyyqlgl dpdlfttifa lsrtagwtah
     421 lleqwadnrl irpraqyvga rdrtvapiae r

Bacillus selenitireducens- halophilic bacerium citrate protein sequence

       1 msttkglegv vattssvssi iddvltyrgy niddladhas feevvyllwn eklptkqeld
      61 tfkkelaevs avpdevinqm rtypidqvhp maalrtavsn lalfdeeads hdedanrrka
     121 lklqaqlpti vaafarvrqg kdpvapkqel syaanflyml ngeepdetsv kaidkalvlh
     181 adhelnastf tsrvcvatls dmysgitaai galkgplhgg anervmamls eietvenaep
     241 yikealankv kimgfghrvy kngdprakhl kemsrqmtei tgeskwydms vkvdeivtge
     301 kgllpnvdfy sasvyhslgi dhdlftpifa vsrvsgwiah ileqysnnrl irpraeyvgp
     361 dkqswipiek r

The following non-salt loving prokaryotes were the top hits among their domain

Alicyclobacillus acidocaldarius- thermoacidiphillic bacterium

Acidobacterium capsulatum- aerobic, mesophilic, chemo-organotroph bacterium citrate synthase protein sequence

       1 mstavatkgl egivaansgi cwidgdagvl ayrgidihel athsnfeett yllwhgklpt
      61 qaeladfskk laaarridpk iydllrslpk tgtpmealrt avsalsffdp neravdhdsn
     121 vrkafdltaq iamivaafdr irkgkaivep dpslshagnf lymlngekps etatkafdia
     181 lilhadheln astfaarvia atlsdihsai tgaigalkgp lhgganeavm rmlfeiekag
     241 adpvehvkkm laekkkvsgf ghrvyhtedp rathlrrmse dlgrsannak wfemsrkiel
     301 yinqekklna nvdfysasty ttlgididlf tpifaisria gwsahvieql ddnrlirpra
     361 eyigpeypsk yipvaer