J-GGA Scaffold 2.0 Sequence
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Revision as of 17:07, 30 July 2013 by Spolpitiyaarachchige (talk | contribs)
Scaffold 2.0 Top
(5’to 3’)
AATTCGCGGCCGCTTCTAGAGCCGTATACACAGAGGACCACGTTGGGTCTTGAACCAGGAGCGGAGTGCTAATGACTGTGCGATTAGGCCTAACGAACAGACAGCTACTAGTAGCGGCCGCTGCA
Scaffold 2.0 Bottom
(5’to 3’)
GCGGCCGCTACTAGTAGCTGTCTGTTCGTTAGGCCTAATCGCACAGTCATTAGCACTCCGCTCCTGGTTCAAGACCCAACGTGGTCCTCTGTGTATACGGCTCTAGAAGCGGCCGCG
Annealed Scaffold Top and Bottom Oligos
Prefix Junction A Junction B Junction C Junction D suffix
AATTCGCGGCCGCTTCTAGAGCCGTATACACAGAGGACCACGTTGGGTCTTGAACCAGGAGCGGAGTGCTAATGACTGTGCGATTAGGCCTAACGAACAGACAGCTACTAGTAGCGGCCGCTGCA
GCGCCGGCGAAGATCTCGGCATATGTGTCTCCTGGTGCAACCCAGAACTTGGTCCTCGCCTCACGATTACTGACACGCTAATCCGGATTGCTTGTCTGTCGATGATCATCGCCGGCG
Scaffold 2.0 Ordering
Scaffold2.0_Top1; AATTCGCGGCCGCTTCTAGAGCCGTATACACAGAGGACCACGTTGGG
Scaffold2.0_Top2; TCTTGAACCAGGAGCGGAGTGCTAATGACTGTGCGATTAGGCCTAACGAACAGACAGCTACTAGTAGCGGCCGCTGCA
Scaffold2.0_Bottom1; GCGGCCGCTACTAGTAGCTGTCTGTTCGTTAGGCCTAATCGCAC
Scaffold2.0_Bottom2; AGTCATTAGCACTCCGCTCCTGGTTCAAGACCCAACGTGGTCCTCTGTGTATACGGCTCTAGAAGCGGCCGCG