Difference between revisions of "Archaeal BJ1 Virus Hit from Spacer 2 in Crispr One: Blast Alignments to Other Halophiles"
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Blastn Alignment: Query= viral (Accession Number: AM419438.1) and Subject=species of choice | Blastn Alignment: Query= viral (Accession Number: AM419438.1) and Subject=species of choice | ||
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Revision as of 05:13, 18 November 2009
What does this virus primarily attack? (Blasted the virus against nr/nt database)
Infects other halophiles, other bacteria and even other viruses
Blastn Alignment: Query= viral (Accession Number: AM419438.1) and Subject=species of choice
OUR SPECIES: Accession Number
CONCLUSION: THESE VIRAL INSERTIONS ARE NOT INTO SPACERS IN THIS SPECIES: aligned spacer number with the significant hits below
Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1
Lots of hits, the ones shown below have e-values less than 0.005, the next e-value not included is 0.018
Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers
Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364
Lots of hits, the ones shown have e-values less than 0.003, next e-value hit not shown is 0.011
Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers
Haloarcula vallismortis Blast Results
didnt accept anything above 0.009
blast recall number: G5P5M4WY111
Haloarcula sinaiiensis: Blast Results
CONCLUSION: found viral insertions of this virus in some of the spacers
didnt accept anything above 0.009
blast recall number: G5RXZPH1113
