Archaeal BJ1 Virus Hit from Spacer One in Crispr One: Blast Alignments to Other Halophiles

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What does this virus primarily attack? (Blasted the virus against nr/nt database)

Avbj1.jpg

Infects other halophiles, other bacteria and even other viruses


Blastn Alignment: Query= viral (Accession Number: AM419438.1) and Subject=species of choice

Halorhabdus utahensis: Accession number determined from NCBI: NC_013158.1

Lots of hits, the ones shown below have e-values less than 0.005, the next e-value not included is 0.018

HU1.jpg

HU2.jpg

HU3.jpg

HU4.jpg

Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers


Halobacterium salinarium R1: Accession number determined from NCBI: NC_010364

Lots of hits, the ones shown have e-values less than 0.003, next e-value hit not shown is 0.011

HS1.jpg

HS2.jpg

HS3.jpg

HS4.jpg

Check to see if any of these hits occur in the spacers of this species by using crispr finder and the nucleotide base numbers


Haloarula californiae= CANNOT FIND ACCESSION NUMBER!!!!!!!!!


Haloferax volcanii= CANNOT FIND ACCESSION NUMBER for whole genome!!!!!!!


Haloferax mediterranei


Haloarcula sinaiiensis


Haloarcula vallismortis


Haloarcula marismortui