Notes 2/23/16

Class Notes FPKM-->should be entering .expected_count Dr. Heyer finished code to get supervised clustering, larger data set is not really graphing, Dr. Heyer set up a way to filter out if row for gene if average of six genes is greater than 10

work on ways to get program to work, looking at different genes of interest and clustering genes that are similar to those

Genes of Possible Interest

• Contig1_DNPEP_Aspartyl_aminopeptidase_Homo_sapiens
  • using this as a gene of interest created a cluster of 4550, showed increased activity in fed with somewhat decreased in nonfed
  • from this found next gene of interest that had ~2500 expression in fed ~1500 in non-fed
• Contig2969_KRT18_Keratin,_type_I_cytoskeletal_18_Homo_sapiens