Tannins

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A type of condensed tannins, found in particular in grape and known as proanthocyanidins, are polymers of 2 to 50 (or more) flavonoid units that are joined by carbon-carbon bonds, which are not susceptible to being cleaved by hydrolysis. Those can nevertheless undergo acid-catalyzed cleavage in the presence of a nucleophile like phloroglucinol, benzyl mercaptan or cysteamine leading to the formation of oligomers that can be further analyzed.

Proanthocyanidins from wikipedia: represent a group of condensed flavan-3-ols, such as procyanidins, prodelphinidins and propelargonidins, that can be found in many plants, most notably apples, maritime pine bark, cinnamon, cocoa, grape seed, grape skin (procyanidins and prodelphinidins),[2] and red wines of Vitis vinifera (the common grape).

However, bilberry, cranberry, black currant, green tea, black tea, and other plants also contain these flavonoids. The berries of chokeberry, specifically black chokeberry, have the highest measured concentrations of proanthocyanidin found in any plant to date.[3][4] [5]

Proanthocyanidins can also be isolated from Quercus petraea and Q. robur heartwood (wine barrel oaks).[6]


Apples contain on average per serving about eight times the amount of proanthocyanidin found in wine, with some of the highest amounts found in the Red Delicious and Granny Smith varieties.[7] All lifted from Wikipedia.

Below are two images of tannin synthesis pathways.

Limits.png
From Robbins et al., 1998. Genetic Manipulation of Condensed Tannins in Higher Plants. Plant Physiology. Vol. 116: 1133-1144. Green box shows the enzymes we were allowed to follow while red Xs indicate enzymes off limits.


I wanted to find blueberry orthologs for:
CHS = chalcone synthase EC:2.3.1.74

CHS results1.png
CHS results2.png

CHI chalcone isomerase EC:5.5.1.6

Chalcone isomerase.png

possible paralogs for this gene. Found start codon.

F3OH = flavanone 3-hydroxylase EC 1.14.11.9
F3OH results.png
DFR = dihydroflavonol 4-reductase EC 1.1.1.219

BB DFR1.png
BB DFR2.png
BB DFR3.png


FDR flavan 3,4-diol reductase (flavan-3,4-diols by EC 1.17.1.3 leucoanthocyanidin reductase)

FDR1.png
FDR2.png


LDOX = leucoanthocyanidin dioxygenase EC:1.14.11.19

LDOX.png


AR = anthocyanin reductase EC:1.3.1.77

AR1.png
AR2.png


All Enzymes mapped to the pathway. These enzymes have multiple functions.

Mother map.png
From KEGG using grape as the species. Note the red enzyme 1.17.1.3.