Server at Davidson College
The Oligator
A program designed to choose oligos for DNA sequences of most lengths
Enter DNA sequence between 22 and 20,000 base pairs (5' to 3')
ATGGCCTTGCTTACAAAACCGACATCAAACTGGACATCACCTCCCACAACGAAGACTACACCATCGTTGAACAGTACGAACGTGCTGAAGGTCGTCACTCCACCGGTGCTTAATAA
Oligo Lengths:
to
Enter a tag for sequence (optional):
Overlap Lengths:
to
Add Golden Gate Assembly Sticky Ends
Add BioBrick Prefix and Suffix
Top left strand:
5'
3'
Complete 5' BioBrick Prefix
Prefix digested with XbaI
Prefix digested with EcoRI
Custom Prefix
Bottom right strand:
3'
5'
top strand
Golden Gate Enzyme:
BbsI
BbvI
BfuAI
BsaI
BsmAI
BsmBI
BsmFI
BspMI
BspQI
BtgZI
EarI
FokI
HgaI
SfaNI
bottom strand
Complete 3' BioBrick Suffix
Suffix digested with SpeI
Suffix digested with PstI
Custom Suffix
top strand
bottom strand
Check for BioBrick Restriction Sites
Remove BioBrick Restriction Sites
ORF begins at base
1
2
3
GCAT Community
Genome Consortium for Active Teaching (
G
C
A
T
)
G
C
A
T
Community Wiki
G
C
A
T
Assessment
Bio-Math Connections
Explore
Web
Bio@Davidson
G
C
A
T