Difference between revisions of "Disease resistance to viral diseases"
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* Table ([[File:Table.pdf]]) of known viral resistance genes that show both dominant and recessive inheritance. (Supplementary materials from Genetics of Plant Viral Resistance [[Media:Annurev.phyto.43.011205.141140 (1).pdf]].) | * Table ([[File:Table.pdf]]) of known viral resistance genes that show both dominant and recessive inheritance. (Supplementary materials from Genetics of Plant Viral Resistance [[Media:Annurev.phyto.43.011205.141140 (1).pdf]].) | ||
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Latest revision as of 17:59, 26 March 2013
Tim C. Keating, Davidson '13
Contents
Plant viruses
Plant viruses represent a huge part of agricultural planning, crop losses and quality reduction around the world. Although simple biologically, the mechanisms they use to survive are complex and not yet well understood. Resistance to plant viruses is an important attribute that is widely prevalent in nature, and often the subject of any plant genetic engineering ventures.
Viral life cycle
- Entry into plant host cell ⇒ un-coating of nucleic acid ⇒ translation of viral proteins⇒ replication of viral nucleic acid⇒ assembly of progeny⇒ cell-cell movement and infection⇒ systemic and plant-plant movement
- Most viruses make it to un-coating viral nucleic acid, even in nonhost species.
What defenses do plants have against viruses?
- Genetic defenses- “R genes” are genes that allow a plant to be a less susceptible host.
- Resistance to most plant viruses is the norm, while the exception is plant susceptibility
- Non-host resistance is said to be the case when discussing a virus that cannot infect any genotype of a certain plant species, which is harder to study
- Host resistance refers to the appearance of a resistant genotype within a population previously susceptible to a particular virus. This phenomenon is easier to study in a genetic context.
- Pathogen resistance is a complex term- it is sometimes hard to tell whether the pathogen is still able to enter the plant and reproduce without the plant showing physical signs, or if the pathogen was stopped all together from entering the plant, as resistance may develop at any point in the pathway towards disease.
- 80% of genetic viral resistance has been shown to be monogenic, with the remainder polygenic or oligogenic
Mechanisms of resistance
- Dominant resistance is most commonly associated with a “recognition” event, leading to a signal cascade that most comonly interferes with viral replication and movement
- Recessive resistance is derived from incompatible viral and host elements, preventing viruses from utilizing crucial cellular machinery of the host for their own use
- HR- hyper-sensitive response
- Mediated cell death surrounding an infected plant area
- Single-cell resistance
- ER- Extreme resistance. Limits viral activity to a single cell by eliminating viral reproduction before it starts. Protease inhibitors?
- Active resistant response that occurs before cell-to-cell movement can occur
- Inhibition of within cell or cell-to-cell movement
- Viruses use movement proteins (MP) to move around a cell, which may be inhibited
- HR mediated cell death inhibits viral infection to a particular place within a plant
- Systemic and plant-plant resistance
- Viruses infiltrate bundle sheath cells and other types to enter the phloem sieve elements, which are the nutrient transport highways of plants much like our circulatory system
- Once the phloem sieve element cells have been infiltrated, the infection becomes systemic.
- Systemic movement is more difficult to study, less R genes. Many plants block entry into companion cells or exit from the phloem sieve elements.
Specific known genes
Previously described viral resistance genes
- Table (File:Table.pdf) of known viral resistance genes that show both dominant and recessive inheritance. (Supplementary materials from Genetics of Plant Viral Resistance Media:Annurev.phyto.43.011205.141140 (1).pdf.)
Gene search raw data
Gene/protein name | Species | aa sequence | mechanism |
BDM | Bean | ||
HRT (RPP8) | Arabidopsis | 332007585|gb|AED94968.1| disease resistance protein RPP8 [Arabidopsis thaliana] | |
MAEAFVSFGLEKLWDLLSRESERLQGIDGQLDGLKRQLRSLQSLLKDADAKKHGSDRVRNFLEDVKDLVF | |||
DAEDIIESYVLNKLSGKGKGVKKHVRRLACFLTDRHKVASDIEGITKRISEVIGEMQSFGIQQIIDGGRS | |||
LSLQERQRVQREIRQTYPDSSESDLVGVEQSVKELVGHLVENDVHQVVSIAGMGGIGKTTLARQVFHHDL | |||
VRRHFDGFAWVCVSQQFTQKHVWQRILQELQPHDGDILQMDEYALQRKLFQLLEAGRYLVVLDDVWKKED | |||
WDVIKAVFPRKRGWKMLLTSRNEGVGIHADPTCLTFRASILNPEESWKLCERIVFPRRDETEVRLDEEME | |||
AMGKEMVTHCGGLPLAVKALGGLLANKHTVPEWKRVFDNIGSQIVGGSWLDDNSLNSVYRILSLSYEDLP | |||
THLKHCFLNLAHFPEDSEISTYSLFYYWAAEGIYDGSTIEDSGEYYLEELVRRNLVIADDNYLSWQSKYC | |||
QMHDMMREVCLSKAKEENFLQIIIDPTCTSTINAQSPSRSRRLSIHSGKAFHILGHKNKTKVRSLIVPRF | |||
EEDYWIRSASVFHNLTLLRVLDLSWVKFEGGKLPCSIGGLIHLRYLSLYEAKVSHLPSTMRNLKLLLYLN | |||
LRVDTEEPIHVPNVLKEMIQLRYLSLPLKMDDKTKLELGDLVNLEYLYGFSTQHSSVTDLLRMTKLRYLA | |||
VSLSERCNFETLSSSLRELRNLETLNFLFSLETYMVDYMGEFVLDHFIHLKQLGLAVRMSKIPDQHQFPP | |||
HLVHLFLIYCGMEEDPMPILEKLLHLKSVRLARKAFLGSRMVCSKGGFPQLCVIEISKESELEEWIVEEG | |||
SMPCLRTLTIDDCKKLKELPDGLKYITSLKELKIEGMKREWKEKLVPGGEDYYKVQHIPDVQFINCDQ" | |||
I | Phaseolus vulgaris | ||
L^1 | Capsicum annuum | 312261112|dbj|BAJ33561.1| CC-NBS-LRR type resistance protein, partial [Capsicum annuum] | |
GGAFLSSALNVLFDRLAPHGDLLNMFQKNKNDVRLLKKLKMTLVGLQVVLSDAENKQASNQHVSQWFNEL | |||
RGAVDGAENLMELVNYEALRLKVEGRHQNLAETSNQQVSDLKLNLSDDYFLDIKEKLEETIETLEDLQKQ | |||
IGDLGLQKHLDLGKKLETRTPSTSLVDESKILGRMIEKERLIDRLLSSDSNGENLTVVPIVGMGGVGKTT | |||
LAKIVYNDKKVKDHFDLKAWFCVSEAYDSFRITKGLLQEIGSFDLKDDNNLNQLQVKLKESLKGKRFLVV | |||
LDDLWNDDSDEWDDLKNLFVQGAMGSKILVTTRKEDVALMMGNGAINVETLSDEVSWDLFKQHSLKNRDP | |||
EEHPELEEVGKQIADKCKGLPLALKALAGILCRKSEVYEWKNVLRSEIWELPRRKNGILPELMLSYNDLP | |||
AHLKRCFAFCAIYPKDYQFCKEQVIHLWIANGLVQQLHSGNQYFNELRSRSLFERVPESSERYGGKFLMH | |||
DLVNDLAQIASSKLCVRLEECQGSHILEQSRHTSYSMGRDGDFEKLKPLSKSEQLRTLLPISIQFLYRPK | |||
LSKRVLHNILPRLTYLRALSLSCYAIVELPKDLFIKFKLLRFLDLSRTEITKLPDSICALYNLETLLLSS | |||
CDDLEELPLQMEKLINLRHLDISNTSRLKMPLHLSKLKSLQVLVGAKFLLGGPCGWRMEDLGEAHYMYGS | |||
LSILELQNVVDRREAQKAKMRDKKKNHVEKLSLEWSGSDADNSQTERDILDELRPHTKIKEVEISGYRGT | |||
RFPNWLADDSFLKLLVQLSLSNCKDCFSLPALGQLPCLKFLSIRKMHRITEVTEEFYGSPSSEKPFNSLE | |||
KLEFAEMPEWKQWHVLGNGEFPALRDLSIEDCPKLVGNFLKNLCSLTKLRISICPDLNLETPIQLSSLKW | |||
FEVSGSSKAGFIFDEAELFTLNILNCNSLTSLPTSTLPSTLKTIWICRCRKLKLEAPDSIRMISDMFLEE | |||
LRLEECDSISSPELVPRARTLTVKRCQNLTRFLIPNGTERLDIWGCENLEIFSVVCGTQMTFLNIHSCAK | |||
LKRLPECMQELLPSLKELHLGNCPEIESFPDGGLPFNLQLLVINYCEKLVNGRKEWRLHRLHSLRELFIN | |||
HDGSDEEIVGGENWELPCSIQRLVIVNLKTLSSQLLKSLTSLESLDIRKLPQIQSLLEQGLPSSFSKLYL | |||
YSHDELHSLQGLQHLNSVQSLLIWNCPNLQSLAESALPSSLSKLTIRDCPNLQSLPKSAFPSFLSELTIE | |||
NCPNLQSLPVKGMPSSLSILSIYKCPFLEPLLEFDKGEYWPEIAHIPKIYIGRTM" | |||
L^2 | Capsicum chinense | 312261110|dbj|BAJ33560.1| CC-NBS-LRR type resistance-like protein [Capsicum chinense] | |
MEIGLAVGGAFLSSALNVLFDRLAPHGDLIKMFQKNKHDVRLLKKLKMTLVGLQAVLSDAENKQASNQHV | |||
SQWLNELRDAVDAAENLMEQVNYEALRLKVEGQLRNVAETSNQQVSDLNLSLIDDYFLNVKEKLEDTIET | |||
LEDLQKQIGFLGLKEHFALTKHETRRHSTSLVEESDVFGRQNEIEELIDRLLSKDASEKSPAVVPIVGMG | |||
GVGKTTLAKAAYNDDKVQSHFNLTAWFCVSEPYDSFRITKGLLQEIGSLQVDDNLNQLQVKLKESLKGKR | |||
FLIVLDDMWNENYNEWNDFWNVFVQGGIGSKIIVTTRKESVALMMRTEQISMDTLSIDDSWSLFKRHAFE | |||
NMDPMEHPEHEEVGKQIVAKCKGLPLALKTLAGMLRSKSEVEGWRCILRSETWDLSKNDILPALMLSYNE | |||
LPPDLKPCFSYCAIFPKDYPFRKEQVIHLWIANGLVEQRGDERIQDLGNQYFNELRSRSLFERVPESSER | |||
DRGKFLMHDLVNDLAQIASSKLCVRLEECQGSHMLEQSRHMSYAMGKGGDLEKLNPLSKSEQLRTLLPIN | |||
IQDLYSPFISKRVLHNILPNLISLRALSLSHYWIKELPDALFIKLKLLRFLDLSWTEIIKLPDSICALFN | |||
LVTLLLSSCRYLEELPLQMEKLVNLRHLDISNTFHLKMPLHLSKLKSLQVLVGAKFLLGGLRMEDLGQLH | |||
NLYGSLSILELQNVVDRREALKAKMREKEHVEKLSLKWSGSIADDSQTERDILDELRPYSYIKGLQISGY | |||
RGTKFPNWLADPLFLKLLVQLSLSNCKDCFSLPALGQLPCLKILSIREMHRITDVTEEFYGSLSSEKPFN | |||
SLERLEFAKMPEWKQWHVLGNGEFPALRNLSIENCPKLMGKLPENLCSLTELRFSRCPELNLETPIQLSS | |||
LKWFEVDDSPKVGVIFDEAELFTSQLELMKQIEKLYISDCNSLTSLPTSTLPSTLKHITICRCQKLKLDL | |||
HECDSILSAESVPRALTLSIWSCQNLTRFLIPNGTERLDIRCCENLEILSVACVTRMTTLIISECKKLKR | |||
LPEGMQELLPSLEELRLSDCPEIESFPDGGLPFTLQLLVIESCKKLVNGRKGWCLQRLPSLRVLDIYHDG | |||
SDEEIVGGENWELPCSIQSLTIDNLKTLSSQLLQSLTSLEYLDTRKLPQIQSLLEQGLPSSLSKLHLYLH | |||
NELHSLPTKGLRHLTLLQSLEISSCHQLQSLPESGLPSSLSELTIRDFPNLQFLPIKWIASSLSKLSICS | |||
CPLLKPLLEFDKGEYWPEIAHIPEIYIGVTIFDHESECL" | |||
L^3 | Capsicum frutescens | 312261118|dbj|BAJ33564.1| CC-NBS-LRR type resistance protein, partial [Capsicum frutescens] | |
GGAFLSSALNVLFDRLAPHGDLLNMFQKNKNDVRLLKKLKMTLVGLQVVLSDAENKQASNQHVSQWFNEL | |||
RGAVDGAENLMELVNYEALRLKVEGRHQNLAETSNQQVSDRKLNLSDDYFLDIKEKLEETIETLEDLQKQ | |||
IGDLGLQKHLDLGKKLETRTPSTSLVDESKILGRMIEKERLIDRLLSSDSNGENLTVVPIVGMGGVGKTT | |||
LAKIVYNDKKVKDHFDLKAWFCVSEAYDAFRITKGLLQEIGSFDLKDDNNLNQLQVKLKESLKGKRFLVV | |||
LDDLWNDDCDEWDDLKNLFVQGAMGSKILVTTRKEDVALMMGNGAINVETLSDEVSWDLFKQHSLKNRDP | |||
EEHPELEEVGKRIADKCKGLPLALKALAGILCRKSEVYEWKNVLRSEIWELPRRKNGILPELMLSYNDLP | |||
AHLKQCFAFCAIYPKDYKFCKEQVIHLWIANGLVQQLHSGNQYFNELRSRSLFERVPESSERYGGKFLMH | |||
DLVNDLAQIASSKLCVRLEECQGSHILEQSRHASYSMGRDGDFEKLKPLSKSEQLRTLLPISIQFLYRPK | |||
LSKRVLHNILPRLTYLRALSLSCYAIVELPKDLFIKFKLLRFLDLSRTEITKLPDSICALYNLETLLLSS | |||
CDDLEELPLQMEKLINLRHLDISNTSRLKMPLHLSKLKSLQVLVGAKFLLGGPCGWRMEDLGEAYYMYGS | |||
LSILELQNVVDRREAQKAKMRDKKKNHVEKLSLEWSGSDADNSQTERDILDELRPHTKIKEVEISGYRGT | |||
QFPNWLADDSFLKLLVQLSLSNCKDCFSLPALGQLPCLKFLSIRNMHRITEVTEEFYGSPSSEKPFNSLE | |||
KLEFAEMPEWKQWHVLGIGEFPALRDLSIEDCPKLVGNFLENLCSLTKLRISICPELNLETPIQLSSLKW | |||
FEVSGSSKAGFIFDEAELFTLNILNCNSLTSLPTSTLPSTLKTIWICRCRKLKLEAPDSSRMISDMFLEE | |||
LRLEECDSISSPELVPRARTLTVKRCQNLTRFLIPNGTERLDIWGCENVEIFSVACGTQMTFLNIHSCAK | |||
LKRLPERMQELLPSLKELHLWNCPEIESFPDGGLPFNLQLLVINYCEKLVNGRKEWRLQRLHSLRELFIN | |||
HDGSDEEIVGGENWELPFSIQRLTIDNLKTLSSQLLKCLTSLESLDFRNLPQIRSLLEQGLPSSFSKLYL | |||
YSHDELHSLQGLQHLNSVQSLLIWNCPNLQSLAESALPSCLSKLTIRDCPNLQSLPKSAFPSSLSELTIE | |||
NCPNLQSLPVKGMPSSLSILSIYKCPFLEPLLEFDKGEYWPEIAHIPEIYIGRTM" | |||
MO1^1 | L. sativa | 32698524|gb|AAP86602.1| eukaryotic translation initiation factor 4E [Lactuca sativa] | |
MKSEEQKLIDVNKHRGVRSDGEEDEQLEEGEIVGGDADTLSSSSSSRPGTAIAQHPLEHSWTFWFDTPSA | |||
KSKQVAWGSSMRPIYTFSSVEEFWSLYNNIHRPSKLAQGADFYCFKNKIEPKWEDPVCANGGKWTMTFTK | |||
AKSDTCWLYTLLAMIGEQFDHGDDICGAVVNVRARQEKIALWTKNAANESAQLSIGKQWKEFIDYNDTIG | |||
FIFHEDAKTLDRSAKNKYTV" | eukaryotic translation initiation factor 4E [Lactuca sativa] | ||
MO1^2 | L. sativa | ||
N | N. tabacum | 45544513|dbj|BAD12594.1| N protein [Nicotiana tabacum] | |
RWSYDVFLSFRGEDTRKTFTSHLYEVLNDKGIKTFQDDKRLEYGATIPGELCKAIEESQFAIVVFSENYA | |||
TSRWCLNELVKIMECKTRFKQTVIPIFYDVDPSHVRNQKESFAKAFEEHETKYKDDVEGIQRWRIALNEA | |||
ANLKGSCDNRDKTDADCIRQIVDQISSKLCKISLSYLQNIVGIDTHLEKIESLLEIGINGVRIMGIWGMG | |||
GVGKTTIARAIFDTLLGRMDSSYQFDGACFLKDIKENKRGMHSLQNALLSELLREKANYNNEEDGKHQMA | |||
SRLRSKKVLIVLDDIDNKDHYLEYLAGDLDWFGNGSRIIITTRDKHLIEKNDIIYEVTALPDHESIQLFK | |||
QHAFGKEVPNENFEKLSLEVVNYAKGLPLALKVWGSLLHNLRLTEWKSAIEHMKNNSYSGIIDKLKISYD | |||
GLEPKQQEMFLDIACFLRGEEKDYILQILESCHIGAEYGLRILIDKSLVFISEYNQVQMHDLIQDMGKYI | |||
VNFQKDPGERSRLWLAKEVEEVMSNNTGTMAMEAIWVSSYSSTLRFSNQAVKNMKRLRVFNMGRSSTHYA | |||
IDYLPNNLRCFVCTNYPWESFPSTFELKMLVHLQLRHNSLRHLWTETKHLPSLRRIDLSWSKRLTRTPDF | |||
TGMPNLEYVNLYQCSNLEEVHHSLGCCSKVIGLYLNDCKSLKRFPCVNVESLEYLGLRSCDSLEKLPEIY | |||
GRMKPEIQIHMQGSGIRELPSSIFQYKTHVTKLLLWNMKNLVALPSSICRLKSLVSLSVSGCSKLESLPE | |||
EIGDLDNLRVFDASDTLILRPPSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDG | |||
GLPEDIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFI | |||
HDLVTKRKKLHRVKLDDAHNDTMYNLFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEKIPSWFHHQG | |||
WDSSVSVNLPENWYIPDKFLGFAVCYSRSLIDTTAHLIPVCDDKMSRMTQKLALSECDTESSNYSEWDIH | |||
FFFVPFAGLWDTSKANGKTPNDYGIIRLSFSGEEKMYGLRLLYKEGPEVNALLQMRENSNEPTEHSTGIR | |||
RTQYNNRT" | |||
N' | Nicotiana sylvestris | 389607301|dbj|BAM17521.1| N' tobamovirus resistance protein [Nicotiana sylvestris] | |
MEIGLAVGGAFLSSALNVLFDRLAPQGELLKMFQRDKHDVRLLKKLRITLLGLQAVLCDAENKKASNQYV | |||
SQWLIELQDAVDSAENLMEEINYEVLRVKVEGQYQNLGETSNQQVSDLNLCLSDEFFLNIKEKLEDAIET | |||
LEELEKQIGRLDLTKYLDSDKQETRRLSTSVVDDSNIFGRQNEIEELVGRLLSVAVNGKNLTVIPIVGMA | |||
GIGKTTLAKAVYNDEKVKYHFDLKAWFCVSEPYDAFRITKGLLQEIGSFDLKMDNNLNQLQVKLKESLKG | |||
KKFLIVLDDVWNDNYNAWEDLKNLFVQGNAGSTIIVTTRKKSVAKTMGNEQISMDTLSSDVSWSLFKRHA | |||
FDNMDPKEHLEHVEVGKEIVAKCKGLPLALKTLAGILRSKSEIEGWKRILRSEVWELPDNGILPVLMLSY | |||
SDLPAHLKQCFSYCAIFPKDYPFRKKQVIQLWIANGLVQGLQKYETIEDLGNLFFLELQSRSLFERVPES | |||
SKNNAEKFLMHDLVNDLAQVASSKLCVRLEEYQESHMLKRSRHMSYSMGYGDFEKLQPLYKLEQLRTLLP | |||
IYNIELYGSSLSKRVLLNILPRLTSLRALSLSRYNIKELPDVLFIKLKLLRLVDLSLTQIIQLPDSICVL | |||
YNLEILLLSSCEFLKELPRQMEKLINLRHLDISGSSRLMMPLHLTKLKSLHVLLGAKFLVGDRSGSRMED | |||
LGELCNLYGTLSIQQLENVADRREALKANMSGKEHIEKLLLEWSVSIADSSQNERDILGEVHPNPNIKEL | |||
EINGYRGTNFPNWLADYSFSELVELSLSNCKDCYSLPALGQLPSLKFLAIRGMHRIIEVTEEFYGGSSSK | |||
KPFNSLEKLDFAEMLAWEQWHVLGNGEFPVLQHLSIEDCPKLIGKLPENLCSLTKLTISHCPKLNLETPV | |||
KFPSLKKFEVEGSPKVGVLFDHAELFLSQLQGMKQIVELYISDCHSLTSLPISSLPNTLKEIRIKRCEKL | |||
KLESSIGKMISRGSNMFLESLELEECDSIDDVSPELVPCARYLRVESCQSLTRLFIPNGAEDLKINKCEN | |||
LEMLSVAQTTPLCNLFISNCEKLKSLPEHMQELFPSLRDLYLKNCPEIESFPEGGLPFNLEILGIRDCCE | |||
LVNGRKEWHLQGLPSLTYLDIYHHGSENWDIMWELPCSIRSLTIDNLKTFSSQVLKSLTSLESLCTSNLP | |||
QIQSLLEEGLPTSLLKLTLSDHGELHSLPTDGLQRLISLQRLRIDNCPNLQYVPESTFPSSLSELHISSC | |||
SFLQSLRESALSSSLSNLFIYSCPNLQSLMLPSSLFELHIIDCRNLQSLPESALPPSLSKLIILTCPNLQ | |||
SLPVKGMPSSISFLSIIDCPLLKPSLEFEKGEYWPNIAHIPNIVIDCECL" | |||
NB | S. tuberosum | 46576968|sp|Q7XBQ9.1|RGA2_SOLBU RecName: Full=Disease resistance protein RGA2; AltName: Full=Blight resistance protein RPI; AltName: Full=RGA2-blb | |
MAEAFIQVLLDNLTSFLKGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNNKPLENWLQKLNAATY | |||
EVDDILDEYKTKATRFSQSEYGRYHPKVIPFRHKVGKRMDQVMKKLKAIAEERKNFHLHEKIVERQAVRR | |||
ETGSVLTEPQVYGRDKEKDEIVKILINNVSDAQHLSVLPILGMGGLGKTTLAQMVFNDQRVTEHFHSKIW | |||
ICVSEDFDEKRLIKAIVESIEGRPLLGEMDLAPLQKKLQELLNGKRYLLVLDDVWNEDQQKWANLRAVLK | |||
VGASGASVLTTTRLEKVGSIMGTLQPYELSNLSQEDCWLLFMQRAFGHQEEINPNLVAIGKEIVKKSGGV | |||
PLAAKTLGGILCFKREERAWEHVRDSPIWNLPQDESSILPALRLSYHQLPLDLKQCFAYCAVFPKDAKME | |||
KEKLISLWMAHGFLLSKGNMELEDVGDEVWKELYLRSFFQEIEVKDGKTYFKMHDLIHDLATSLFSANTS | |||
SSNIREINKHSYTHMMSIGFAEVVFFYTLPPLEKFISLRVLNLGDSTFNKLPSSIGDLVHLRYLNLYGSG | |||
MRSLPKQLCKLQNLQTLDLQYCTKLCCLPKETSKLGSLRNLLLDGSQSLTCMPPRIGSLTCLKTLGQFVV | |||
GRKKGYQLGELGNLNLYGSIKISHLERVKNDKDAKEANLSAKGNLHSLSMSWNNFGPHIYESEEVKVLEA | |||
LKPHSNLTSLKIYGFRGIHLPEWMNHSVLKNIVSILISNFRNCSCLPPFGDLPCLESLELHWGSADVEYV | |||
EEVDIDVHSGFPTRIRFPSLRKLDIWDFGSLKGLLKKEGEEQFPVLEEMIIHECPFLTLSSNLRALTSLR | |||
ICYNKVATSFPEEMFKNLANLKYLTISRCNNLKELPTSLASLNALKSLKIQLCCALESLPEEGLEGLSSL | |||
TELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIYI" | Broad resistance to late blight | ||
NSV | Cucumis melo L. | 311992493|gb|ABR67409.2| TIR-NBS-LRR disease resistance protein [Cucumis melo subsp. melo] | |
MDSSTVATKSPTFGWSYDVFLSFRGEDTRTNFTSHLDMALRQKGVNVFIDDKLERGEQISETLFKSIQEA | |||
LISIVIFSQNYASSSWCLDELVNIIECKKSKGQIVLPVFYKVDPSDIRTQTGSFGEALAKHQAKFQIKTQ | |||
IWREALTTAANLSGWDLGTRKEANLIGDLVKKVLSTLNRTCTPLYVAKYPVAIDSILEYMKLRSHINLFE | |||
KSNKFHYQTQHEYEFDTDVNMVGIYGIGGIGKTTLAKALYNKIASQFEGCCFLSNVREASKQFNGLAQLQ | |||
ESLLYEILTIYLKVVNFDRGINIIRNRLCSKKVLIVLDDVDKLEQLEALVGGRDWFGQGSRIIVTTRNKH | |||
LLSSHGFDEIHNILGLNEEKAIELFSWHAFKKNHPSSNYLNLSKRATSYCRGHPLALVVLGSFLCTRDQV | |||
EWCSILDEFENSLNKDIKDILQLSFDGLEDKMGHKIVCGESLELGKRSRLWLVQDVWDVLVNNSGTDAVK | |||
AIKLDFPNPTKLDVDLQAFRKMKNLRLLIVQNARFCTKIEYLPDSLKWIKWHGFPQSTLPSCFITKNLVG | |||
LDLQHSFIKTFEKRLKDCERLKHVDLSYSTLLEQIPDFSAASNLGELYLINCTNLGMIDKSLFSLNNLIV | |||
LNLDGCSNLKKFPRGYFMLSSLKELRLSYCKKLEKIPDLSAASNLERLYLQECTNLRLIHESVGSLDKLD | |||
HLDLRQCTNLSKLPSHLRLKSLQNLELSRCCKLESFPTIDENMKSLRHLDLDFTAIKELPSSIGYLTELC | |||
TLNLTSCTNLISLPNTIYLLRNLDELLLSGCSRFRIFPHKWDRSIQPVCSPTKMIETTSWSLEFPHLLVP | |||
NESLFSHFTLLDLKSCNISNAKFLEILCDVAPFLSDLRLSENKFSSLPSCLHKFMSLWNLELKNCKFLQE | |||
IPNLPKNIQKMDASGCESLVRSPNNIVDIISKKQVRL" | resistance gene cluster | ||
POT-1 | Solanum hirsutum | 56412237|gb|AAV88612.1| eukaryotic translation initiation factor 4E [Solanum habrochaites] | |
MAAAEMERTMSFDAAEKLKAADGGGGEVDDELEEGEIVEESNDTASYLGKEITVKHPLEHSWTFWFDNST | |||
TKSRQTAWGSSLRNLYTFSTVEDFWGAYNNIHHPSKLIMGADFHCFKHKIEPQWEDPVCANGGTWKMSFS | |||
KGKSDTSWLYTLLAMIGHQFDHGDEICGAVVSVRAKGEKIALWTKNAANETAQVSIGKQWKQFLDYSDSV | |||
GFIFHDDAKRLDRSAKNRYTV" | |||
PVR1 | Capsicum annuum | 157411019|gb|ABV54210.1| eukaryotic translation initiation factor 4E [Capsicum annuum] | |
AYNNIHHPSKLVVGADLHCFKHKIEPKWEDPVCANGGTWKMSFSKGKSDTSWLYTLLAMIGHQFDHEDEI | |||
CGAVVSVRGKGEKISLWTKNAANETAQ" | http://www.ncbi.nlm.nih.gov/pubmed/15842624 | ||
PVR1^1 | Capsicum annuum | F1RMT1|F1RMT1_PIG Uncharacterized protein OS=Sus scrofa GN=LOC100525346 PE=4 SV=2 | |
MAGATPSAWALLLFLLSLSWERPTTGDKTQTSVLAPAQVLGFLGNITKLSCKLQPLQHEV | |||
TVTQVTWTQQKLSEASRSVAVFHPTRGPSFPEPGRWEFEAARAGEEVQDASLIIWELRAE | |||
DEANYTCQFATFPDGDRSARTRLRVLAQPQNKVETQEVPLSPLSLEPVPVARCVSTGGRP | |||
PARISWSSHLDSKAYKSQVPGPRPGTFTVSSFLTLTPSSQVDGQNVTCKVEHESFEEPMV | |||
LPVTLTVPYPPEVSISGYDDNWYLGRSEATLNCDIRSKPEPTGYNWSTTMGPLPPSAVAQ | |||
DTQLLIHTVDESINTTFVCSVTNALGTGQAELTVLVRGLPREKPYPSSSSKVTIISVVVL | |||
LLLLLLLGILACIWRSRRSRESPLFWHIS" | http://useast.ensembl.org/Sus_scrofa/Transcript/Similarity?g=ENSSSCG00000003079;r=6:47025630-47036662;t=ENSSSCT00000003416 | ||
PVR1^2 | Capsicum annuum | 157411019|gb|ABV54210.1| eukaryotic translation initiation factor 4E [Capsicum annuum]- coded by PVR1 | |
AYNNIHHPSKLVVGADLHCFKHKIEPKWEDPVCANGGTWKMSFSKGKSDTSWLYTLLAMIGHQFDHEDEI | |||
CGAVVSVRGKGEKISLWTKNAANETAQ" | |||
RCY1 | A. thaliana | 330252744|gb|AEC07838.1| cyclin-L1-1 [Arabidopsis thaliana] | |
MATGQVLFQRFYCKKSLAKFDVKIVAASCVWLASKLEENPKKARQVIIVFHRMECRRENLPLEHLDMYAK | |||
KFSELKVELSRTERHILKEMGFVCHVEHPHKFISNYLATLETPPELRQEAWNLANDSLRTTLCVRFRSEV | |||
VACGVVYAAARRFQVPLPENPPWWKAFDADKSSIDEVCRVLAHLYSLPKAQYISVCKDGKPFTFSSRSGN | |||
SQGQSATKDLLPGAGEAVDTKCTAGSANNDLKDGMVTTPHEKATDSKKSGTESNSQPIVGDSSYERSKVG | |||
DRERESDREKERGRERDRGRSHRGRDSDRDSDRERDKLKDRSHHRSRDRLKDSGGHSDKSRHHSSRDRDY | |||
RDSSKDRRRHH" | http://www.ncbi.nlm.nih.gov/protein/330252744?report=genpept | ||
RSV1 | Glycine max | HR | |
RTM1 | A. thaliana | 6503088|gb|AAF14583.1|AF191302_1 RTM1 [Arabidopsis thaliana] | |
MKIGPVGKHDARSTTIVNWDEGSHDGFISQIFLSHGVAGIMSIQFQFVMDGKLVLSDRHGPFSGNMFDVI | |||
ELNYPHEYITGISGEYYKYEANNPHMRSLKFNTNTSEYGPFGTSGSSNDKFAFKLGKSPQFGGFHGTYDA | |||
SGLQYIGVYLRPKTVLPKIDTGNAEETESKIVLG" | Cloning of the Arabidopsis RTM1 gene, which controls restriction of long-distance movement of tobacco etch virus | ||
RTM2 | A. thaliana | 302609020|emb|CBW45886.1| RTM2 protein [Arabidopsis thaliana] | |
MAARQQQKGTGFGVQYEDFVPKSEWKDQPEATILNIDLTGFAKEQMKVTYVHSSKMIRVTGERPLANRKW | |||
SRFNEVFTVPQNCLVDKIHGSFKNNVLTITMPKETITKVAYLPETSRTEAAALEKAAKLEEKRLLEESRR | |||
KEKEEEEAKQMKKQLLEEKEALIRKLQEEAKAKEEAEMRKLQEEAKAKEEAAAKKLQEEIEAKEKLEERK | |||
LEERRLEERKLEDMKLAEEAKLKKIQERKSVDESGEKEKILKPEVVYTKSGHVATPKPESGSGLKSGFGG | |||
VGEVVKSAEEKLGNLVEKEKKMGKGIMEKIRRKEITSEEKKLMMNVGVAALVIFALGAYVSYTFCSSSSS | |||
SSSSSPSSSSSSTKPE" | "The RTM Resistance to Potyviruses in Arabidopsis thaliana: Natural | ||
Variation of the RTM Genes and Evidence for the Implication of | |||
Additional Genes" | |||
RX1 | S. tuberosum | 164598916|gb|ABY61745.1| resistance protein PSH-RGH6 [Solanum tuberosum] | |
MAYAAVTSLMRTIHQSMELTGCDLQPFYEKIESLRAILEKSCNIMGDHEGLTILEVEIAEVAYTTEDMVD | |||
SESRNVFLAQNLEERSRAMWEIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHAFEQPEN | |||
IMVGYENEFEMMLDQLVRGGRELEVVSIVGMGGIGKTTLATKLYSDPCIMPRFDIRAKATVSQEYCVRNV | |||
LQGLLSSISDEPDDQLADRLQKHLKGRRYLVVIDDIWTTETWDDIKLCFPDCNNGSRILLTTRNVEVAEY | |||
ASSGKPPHHMRLMNFEESWNLLYKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITVIAGLLSKISKTLD | |||
EWQNVAENVSSVVSTDLEAQCMRVLALSYHHLPSHLKSCFLYFAIFAEDEQIYVNNLVELWGVEGFLNEE | |||
EGKSIEEVAETCINELVDRSLISIHNLSFDGEIERCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQ | |||
SMQCSFKSRSRICIHNEEELAWCRNSEAHSIIMSRRFKCVTLELSFKLVRVLDLGLTRFPIFPSGVLSLI | |||
HLRYLSLCFYPCLKQYLGSKEAVPSSIIDIPLSISSLCYLQTFKLYFPFFYRYPFILPSEILTMPQLRKL | |||
HMGWNYLQSHEPTENRLVLKNLQCLTQLNPRYCTGSFFRPFPNLKKFEVFGVPEDFRNHKDLYDFRYLYQ | |||
LEKLVFSSYYPTDVPTLLLPPPDAFPQNLKSLAFKGNFLLAWKDLSIVGKLPKLEVLQLSGNAFIGEEWE | |||
VVEEGFPHLKFLFLDNLNIQYWRASSDHFPYLERLFLRGCNNLDSIPRDFADITTLALIDISDCQQSVGN | |||
SAKQIQQDIQDNYGSSIEVYTRDLFQKLRCSED" | "Sequence exchange between potato R gene homologs enables | ||
bidirectional conversion of extreme virus resistance into mild | |||
inhibition of nematode-induced feeding cells. /name=""Rx1/Gpa2 resistance-like protein""" | |||
RX2 | S. tuberosum | 5911745|emb|CAB55838.1| NBS-LRR protein [Solanum tuberosum subsp. andigenum] | |
MAYAAVTSLMRTIHQSMELTGCDLQPFYEKLKSLRAILEKSCNIMGDHEGLTILEVEIIEVAYTTEDMVD | |||
SESRNVFLARNVGKRSRAMWGIFFVLEQALECIDSTVKQWMATSDSMKDLKPQTSSLVSLPEHDVEQPEN | |||
IMVGRENEFEMMLDQLARGGRELEVVSIVGMGGIGKTTLAAKLYSDPYIMSRFDIRAKATVSQEYCVRNV | |||
LLGLLSLTSDEPDYQLADQLQKHLKGRRYLVVIDDIWTTEAWDDIKLCFPDCDNGSRILLTTRNVEVAEY | |||
ASSGKPPHHMRLMNFDESWNLLHKKIFEKEGSYSPEFENIGKQIALKCGGLPLAITLIAGLLSKISKTLD | |||
EWQNVAENVRSVVSTDLEAKCMRVLALSYHHLPSHLKPCFLYFAIFAEDERIYVNKLVELWAVEGFLNEE | |||
EGKSIEEVAETCINELVDRSLISIHNVSFDGETQRCGMHDVTRELCLREARNMNFVNVIRGKSDQNSCAQ | |||
SMQCSFKSRSRISIHNEEELVWCRNSEAHSIITLCIFKCVTLELSFKLVRVLDLGLTTCPIFPSGVLSLI | |||
HLRYLSLRFNPRLQQYRGSKEAVPSSIIDIPLSISSLCYLQTFKLYHPFPNCYPFILPSEILTMPQLRKL | |||
CMGWNYLRSHEPTENRLVLKSLQCLNELNPRYCTGSFLRLFPNLKKLEVFGVKEDFRNHKDLYDFRYLYQ | |||
LEKLAFSTYYSSSACFLKNTAPLGSTPQDPLRFQMETLHLETHSRATAPPTDVPTFLLPPPDCFPQNLKS | |||
LTFSGDFFLAWKDLSIVGKLPKLEVLQLSHNAFKGEEWEVVEEGFPHLKFLFLDSIYIRYWRASSDHFPY | |||
LERLFLSDCFYLDSIPRDFADITTLALIDIFRCQQSVGNSAKQIQQDIQDNYGSSIEVHTRYLYRNGAFL | |||
VV" | "NBS-LRR protein [Solanum tuberosum subsp. andigenum].Agrobacterium transient expression system as a tool for the | ||
isolation of disease resistance genes: application to the Rx2 locus | |||
in potato" | |||
RY | S. tuberosum | HR | |
SBM1 | P. sativum | 305677605|pdb|2WMC|G Chain G, Crystal Structure Of Eukaryotic Initiation Factor 4e From Pisum Sativum | |
MPHLLENSWTFWFDTPAAKSKQAAWGSSMRPIYTFSTVEEFWSIYNNIHHPGKLAVGADFYCFKHKIEPK | |||
WEDPICANGGKWTANYPKGKSDTSWLYTLLAMIGEQFDHGDEICGAVVNVRGRAEKISIWTKNASNEAAQ | |||
VSIGKQWKEFLDYNETMGFIFHDDARKLDRNAKNKYVV" | "Structure-Based Mutational Analysis of eIF4E in Relation to sbm1 | ||
Resistance to Pea Seed-Borne Mosaic Virus in Pea" | |||
SW-5 | Solanum lycopersicum | 228481316|gb|ACQ42910.1| tomato spotted wilt virus resistance protein [Solanum lycopersicum] | |
ELSSIFRDVVHHEHNIPKDLQRRTINLSYEAEVAIDSILAQYNAFLHIFCSLPTIVKEIKQINAEVTEMW | |||
SADIPLNPHYVAAPLKHLPDRHSNLVTDEEVVGFENKAEELIDYLIRGTNELDVVPIVGMGGQGKTTIAR | |||
KLYNNDIIVSRFDVRAWCIISQTYNRRELLQDIFSQVTGS" | |||
TM-1 | S. lycopersicum | 155676751|dbj|BAF75725.1| Tm-1 protein [Solanum lycopersicum] | |
MATAQSNSPRVFCIGTADTKFDELRFLSEHVRSSLNSFSNKSSFKVGVTVVDVSTSRKETNSCADFDFVP | |||
SKDVLSCYARGEGTVGRFPDIRGQAIAIMNKALETFLSKANGEQNLAGVIGLGGSGGTSLLSSAFRSLPI | |||
GIPKVIISTVASGQTESYIGTSDLVLFPSVVDICGINNVSKVVLSNAGAAFAGMVIGRLESSKEHSITNG | |||
KFTVGVTMFGVTTPCVNAVKERLVKEGYETLVFHATGVGGRAMEDLVRGGFIQGVLDITTTEVADYVVGG | |||
VMACDSSRFDAILEKKIPLVLSVGALDMVNFGPKTTIPPEFQQRKIHQHNEQVSLMHTTVGENKKFAAFI | |||
AEKLNKASSSVCVCLPEKGVSALDAPGKDFYDPEATSCLTHELQMLLENNERCQVKVYPYHINDVEFANA | |||
LVDSFLEMSPKSGHVECQTAESKSIQGIQNVNAVLEKYPSCNGKNFSRLNDFPNAKPETLQKRIVILQKL | |||
KDQISKGKPIIGAGAGTGISAKFEEAGGVDLIVLYNSGRFRMAGRGSLAGLLPFADANAIVLEMANEVLP | |||
VVKEVAVLAGVCATDPFRRMDNFLKQLESVGFCGVQNFPTVGLFDGNFRQNLEETGMGYGLEVEMIATAH | |||
RMGLLTTPYAFCPDEAVAMAEAGADIIVAHMGLTTSGSIGAKTAVSLEESVTCVQAIADATHRINPDAIV | |||
LCHGGPISSPEEAAYVLKRTTGVHGFYGASSMERLPVEQAITATVQQYKSISME" | "An inhibitor of viral RNA replication is encoded by a plant | ||
resistance gene" | |||
TM-2 | S. lycopersicum | 226374401|gb|ACO52380.1| disease susceptible protein tm-2, partial [Solanum lycopersicum] | |
EGNICGKLPNSIVKLTRLETIDIDRRSLIQLPSGVWESKHLRHLCYRDYGQACNSCFSISSFYPNIYSLH | |||
PNNLQTLMWIPDKFFEPRLLHRLINLRKLGILGVSNSTVKILSTCRPVPKALKVLKLRFFSDPSEQINLS | |||
SYPKIVKLHLNVDRTIALNSEAFPPNIIKLTLVCFMVDSCLLAVLKTLPKLRKLKMVICKYNEEKMALSG | |||
EANGYSFPQLEVLHIHSPNGLSEV" | Development of SNP markers for disease resistance genes in tomato | ||
TM-2^2 | S. lycopersicum | 33330976|gb|AAQ10736.1| Tm-2^2 ToMV resistance protein [Solanum lycopersicum] | |
MAEILLTSVINKSVEIAGNLLIQEGKRLYWLKEDIDWLQREMRHIRSYVDNAKAKEAGGDSRVKNLLKDI | |||
QELAGDVEDLLDDFLPKIQQSNKFNYCLKRSSFADEFAMEIEKIKRRVVDIDRIRKTYNIIDTDNNNDDC | |||
VLLDRRRLFLHADETEIIGLDDDFNMLQAKLLNQDLHYGVVSIVGMPGLGKTTLAKKLYRLIRDQFECSG | |||
LVYVSQQPRASEILLDIAKQIGLTEQKMKENLEDNLRSLLKIKRYVILLDDIWDVEIWDDLKLVLPECDS | |||
KVGSRMIITSRNSNVGRYIGGESSLHALQPLESEKSFELFTKKIFNFDDNNSWANASPDLVNIGRNIVGR | |||
CGGIPLAIVVTAGMLRARERTEHAWNRVLESMGHKVQDGCAKVLALSYNDLPIASRPCFLYFGLYPEDHE | |||
IRAFDLINMWIAEKFIVVNSGNRREAEDLAEDVLNDLVSRNLIQLAKRTYNGRISSCRIHDLLHSLCVDL | |||
AKESNFFHTAHDAFGDPGNVARLRRITFYSDNVMIEFFRSNPKLEKLRVLFCFAKDPSIFSHMAYFDFKL | |||
LHTLVVVMSQSFQAYVTIPSKFGNMTCLRYLRLEGNICGKLPNSIVKLTRLETIDIDRRSLIQPPSGVWE | |||
SKHLRHLCYRDYGQACNSCFSISSFYPNIYSLHPNNLQTLMWIPDKFFEPRLLHRLINLRKLGILGVSNS | |||
TVKMLSIFSPVLKALEVLKLSFSSDPSEQIKLSSYPHIAKLHLNVNRTMALNSQSFPPNLIKLTLAYFSV | |||
DRYILAVLKTFPKLRKLKMFICKYNEEKMDLSGEANGYSFPQLEVLHIHSPNGLSEVTCTDDVSMPKLKK | |||
LLLTGFHCRISLSERLKKLSK" | "Cloning and characterization of the durable tomato mosaic virus | ||
resistance gene Tm-2(2) from Lycopersicon esculentum" | |||
TU | L. sativa | not found | |
TURBO1 | Brassica napus | ||
TURBO1b | Brassica napus | ||
TURBO3 | Brassica napus | ||
TURBO4 | Brassica napus | ||
TURBO5 | Brassica napus | ||
VA | N. tabacum | ||
Pto | Solanum peruvianum | 70913187|gb|AAZ15370.1| Pto disease resistance protein [Solanum peruvianum] | |
TNSINDALSSSYLVPFESYRVPLVDLEEATNNFDDKFFIGHGVFGKVYKGVLRDGTKVALKRRQPESSQG | |||
IEEFETEIETLSFCRHPHLVSLIGFCDERNEMVLIYKYMENGNLKRYLYGSDLPTMSMSWEQRLEICIGA | |||
ARGLHYLHTRAVIHRDVKSINILLDENFVAKITDFGISKKGTELDQTHLSTIVKGTLGYLDPEYFIKGRL | |||
TEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEWAVESHNKGQLEQIVDPNLADKIRPESLRKFGET | |||
AVKCLALSSEDRPSMGDVLWKLEYA" | |||
Xa21 | O. longistaminata | 2586085|gb|AAC80225.1| receptor kinase-like protein [Oryza longistaminata] | |
MISLPLLLFVLLFSALLLCPSSSDDDGDAAGDELALLSFKSSLLYQGGQSLASWNTSGHGQHCTWVGVVC | |||
GRRRRRHPHRVVKLLLRSSNLSGIISPSLGNLSFLRELDLGDNYLSGEIPPELSRLSRLQLLELSDNSIQ | |||
GSIPAAIGACTKLTSLDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFN | |||
RLSGAIPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLLEVIDM | |||
GTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQTREQDDWGFISDLTNC | |||
SKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKDIGNLIGLQHLYLCNNNFRGSLPSSL | |||
GRLKNLGILLAYENNLSGSIPLAIGNLTELNILLLGTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPS | |||
ELFNIQTLSIMINVSKNNLEGSIPQEIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGS | |||
IPSALGQLKGLETLDLSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLC | |||
GGIPDLHLPRCCPLLENRKHFPVLPISVSLAAALAILSSLYLLITWHKRTKKGAPSRTSMKGHPLVSYSQ | |||
LVKATDGFAPTNLLGSGSFGSVYKGKLNIQDHVAVKVLKLENPKALKSFTAECEALRNMRHRNLVKIVTI | |||
CSSIDNRGNDFKAIVYDFMPNGSLEDWIHPETNDQADQRHLNLHRRVTILLDVACALDYLHRHGPEPVVH | |||
CDIKSSNVLLDSDMVAHVGDFGLARILVDGTSLIQQSTSSMGFIGTIGYAAPEYGVGLIASTHGDIYSYG | |||
ILVLEIVTGKRPTDSTFRPDLGLRQYVELGLHGRVTDVVDTKLILDSENWLNSTNNSPCRRITECIVWLL | |||
RLGLSCSQELPSSRTPTGDIIDELNAIKQNLSGLFPVCEGGSLEF" | |||
RPS2 | A. thaliana | 549979|gb|AAA50236.1| RPS2 [Arabidopsis thaliana] | |
MDFISSLIVGCAQVLCESMNMAERRGHKTDLRQAITDLETAIGDLKAIRDDLTLRIQQDGLEGRSCSNRA | |||
REWLSAVQVTETKTALLLVRFRRREQRTRMRRRYLSCFGCADYKLCKKVSAILKSIGELRERSEAIKTDG | |||
GSIQVTCREIPIKSVVGNTTMMEQVLEFLSEEEERGIIGVYGPGGVGKTTLMQSINNELITKGHQYDVLI | |||
WVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEEIDLEKTGVPRPDR | |||
ENKCKVMFTTRSIALCNNMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPL | |||
ALITLGGAMAHRETEEEWIHASEVLTRFPAEMKGMNYVFALLKFSYDNLESDLLRSCFLYCALFPEEHSI | |||
EIEQLVEYWVGEGFLTSSHGVNTIYKGYFLIGDLKAACLLETGDEKTQVKMHNVVRSFALWMASEQGTYK | |||
ELILVEPSMGHTEAPKAENWRQALVISLLDNRIQTLPEKLICPKLTTLMLQQNSSLKKIPTGFFMHMPVL | |||
RVLDLSFTSITEIPLSIKYLVELYHLSMSGTKISVLPQELGNLRKLKHLDLQRTQFLQTIPRDAICWLSK | |||
LEVLNLYYSYAGWELQSFGEDEAEELGFADLEYLENLTTLGITVLSLETLKTLFEFGALHKHIQHLHVEE | |||
CNELLYFNLPSLTNHGRNLRRLSIKSCHDLEYLVTPADFENDWLPSLEVLTLHSLHNLTRVWGNSVSQDC | |||
LRNIRCINISHCNKLKNVSWVQKLPKLEVIELFDCREIEELISEHESPSVEDPTLFPSLKTLRTRDLPEL | |||
NSILPSRFSFQKVETLVITNCPRVKKLPFQERRTQMNLPTVYCEEKWWKALEKDQPNEELCYLPRFVPN" | |||
RPM1 | A. thaliana | 440572080|gb|AGC12590.1| RPM1 [Arabidopsis thaliana] | |
MASATVDFGIGRILSVLENETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVAN | |||
TRDLAYQIEDILDEFGYHIHGYRSCAKIWRAFHFPRYMWARHSIAQKLGMVNVMIQSISDSMKRYYHSEN | |||
YQAALLPPIDDGDAKWVNNISESSLFFSENSLVGIDAPKGKLIGRLLSPEPQRIVVAVVGMGGSGKTTLS | |||
ANIFKSQSVRRHFESYAWVTISKSYVIEDVFRTMIKEFYKEADTQIPAELYSLGYRELVEKLVEYLQSKR | |||
YIVVLDDVWTTGLWREISIALPDGIYGSRVMMTTRDMNVASFPYGIGSTKHEIELLKEDEAWVLFSNKAF | |||
PASLEQCRTQNLEPIARKLVERCQGLPLAIASLGSMMSTKKFESEWKKVYSTLNWELNNNHELKIVRSIM | |||
FLSFNDLPYPLKRCFLYCSLFPVNYRMKRKRLIRMWMAQRFVEPIRGVKAEEVADSYLNELVYRNMLQVI | |||
LWNPFGRPKAFKMHDVIWEIALSVSKLERFCDVYNDDSDGDDAAETMENYGSRHLCIQKEMTPDSIRATN | |||
LHSLLVCSSAKHKMELLPSLNLLRALDLEDSSISKLPDCLVTMFNLKYLNLSKTQVKELPKNFHKLVNLE | |||
TLNTKHSKIEELPLGMWKLKKLRYLITFRRNDGHDSNWNYVLGTRVVPKIWQLKDLQVMDCFNAEDEIIK | |||
NLGCMTQLTRISLVMVRREHGRDLCDSLNKIKRIRFLSLTSIDEEEPLEIDDLIATASIEKLFLAGKLER | |||
VPSWFNTLQNLTYLGLRGSQLQENAILSIQTLPRLVWLSFYNAYMGPRLRFAQGFQNLKILEIVQMKHLT | |||
EVVIEDGAMFELQKLYVRACRGLEYVPRGIENLINLQELHLIHVSNQLVERIRGEGSVDRSRVKHIPAIK | |||
HYFRTDNGSFYVSLSS" | "Parallel Loss-of-Function at the RPM1 Bacterial Resistance Locus in | ||
Arabidopsis thaliana" | |||
L6 | 862905|gb|AAA91022.1| L6 [Linum usitatissimum] | ||
MSYLREVATAVALLLPFILLNKFWRPNSKDSIVNDDDDSTSEVDAISDSTNPSGSFPSVEYEVFLSFRGP | |||
DTREQFTDFLYQSLRRYKIHTFRDDDELLKGKEIGPNLLRAIDQSKIYVPIISSGYADSKWCLMELAEIV | |||
RRQEEDPRRIILPIFYMVDPSDVRHQTGCYKKAFRKHANKFDGQTIQNWKDALKKVGDLKGWHIGKNDKQ | |||
GAIADKVSADIWSHISKENLILETDELVGIDDHITAVLEKLSLDSENVTMVGLYGMGGIGKTTTAKAVYN | |||
KISSCFDCCCFIDNIRETQEKDGVVVLQKKLVSEILRIDSGSVGFNNDSGGRKTIKERVSRFKILVVLDD | |||
VDEKFKFEDMLGSPKDFISQSRFIITSRSMRVLGTLNENQCKLYEVGSMSKPRSLELFSKHAFKKNTPPS | |||
YYETLANDVVDTTAGLPLTLKVIGSLLFKQEIAVWEDTLEQLRRTLNLDEVYDRLKISYDALNPEAKEIF | |||
LDIACFFIGQNKEEPYYMWTDCNFYPASNIIFLIQRCMIQVGDDDEFKMHDQLRDMGREIVRREDVLPWK | |||
RSRIWSAEEGIDLLLNKKGSSKVKAISIPWGVKYEFKSECFLNLSELRYLHAREAMLTGDFNNLLPNLKW | |||
LELPFYKHGEDDPPLTNYTMKNLIIVILEHSHITADDWGGWRHMMKMAERLKVVRLASNYSLYGRRVRLS | |||
DCWRFPKSIEVLSMTAIEMDEVDIGELKKLKTLVLKFCPIQKISGGTFGMLKGLRELCLEFNWGTNLREV | |||
VADIGQLSSLKVLKTTGAKEVEINEFPLGLKELSTSSRIPNLSQLLDLEVLKVYDCKDGFDMPPASPSED | |||
ESSVWWKVSKLKSLQLEKTRINVNVVDDASSGGHLPRYLLPTSLTYLKIYQCTEPTWLPGIENLENLTSL | |||
EVNDIFQTLGGDLDGLQGLRSLEILRIRKVNGLARIKGLKDLLCSSTCKLRKFYITECPDLIELLPCELG | |||
GQTVVVPSMAELTIRDCPRLEVGPMIRSLPKFPMLKKLDLAVANITKEEDLDAIGSLEELVSLELELDDT | |||
SSGIERIVSSSKLQKLTTLVVKVPSLREIEGLEELKSLQDLYLEGCTSLGRLPLEKLKELDIGGCPDLTE | |||
LVQTVVAVPSLRGLTIRDCPRLEVGPMIQSLPKFPMLNELTLSMVNITKEDELEVLGSLEELDSLELTLD | |||
DTCSSIERISFLSKLQKLTTLIVEVPSLREIEGLAELKSLRILYLEGCTSLERLWPDQQQLGSLKNLNVL | |||
DIQGCKSLSVDHLSALKTTLPPRARITWPDQPYR" | "The L6 gene for flax rust resistance is related to the Arabidopsis | ||
bacterial resistance gene RPS2 and the tobacco viral resistance | |||
gene N" | |||
RPP5 | 332658426|gb|AEE83826.1| TIR-NBS-LRR class disease resistance protein [Arabidopsis thaliana] | ||
MAASSSSGRRRYDVFPSFSGVDVRKTFLSHLIEALDGKSINTFIDHGIERSRTIAPELISAIREARISIV | |||
IFSKNYASSTWCLNELVEIHKCFNDLGQMVIPVFYDVDPSEVRKQTGEFGKVFEKTCEVSKDKQPGDQKQ | |||
RWVQALTDIANIAGEDLLNGPNEAHMVEKISNDVSNKLITRSKCFDDFVGIEAHIEAIKSVLCLESKEAR | |||
MVGIWGQSGIGKSTIGRALFSQLSIQFPLRAFLTYKSTSGSDVSGMKLSWEKELLSEILGQKDIKIEHFG | |||
VVEQRLKHKKVLILLDDVDNLEFLKTLVGKAEWFGSGSRIIVITQDRQFLKAHDIDLVYEVKLPSQGLAL | |||
TMLCRSAFGKDSPPDDFKELAFEVAKLAGHLPLGLNVLGSSLRRRGKKEWMEMMPRLRNGLNGDIMKTLR | |||
VSYDRLHQKDQDMFLCIACLFNGFEVSYVKDLLEDNVGLTMLSEKSLIRITPDGHIEMHNLLEKLGREID | |||
RAKSKGNPGKRQFLTNFEDIHEVVTEKTGTETLLGIRLPFEEYFSTRPLLIDKESFKGMRNLQYLKIGDW | |||
SDGGQPQSLVYLPLKLRLLDWDDCPLKSLPSTFKAEYLVNLIMKYSKLEKLWEGTLPLGSLKKMNLLCSK | |||
NLKEIPDLSNARNLEELDLEGCESLVTLPSSIQNAIKLRKLHCSGVILIDLKSLEGMCNLEYLSVDCSRV | |||
EGTQGIVYFPSKLRLLLWNNCPLKRLHSNFKVEYLVKLRMENSDLEKLWDGTQPLGRLKQMFLRGSKYLK | |||
EIPDLSLAINLEEVDICKCESLVTFPSSMQNAIKLIYLDISDCKKLESFPTDLNLESLEYLNLTGCPNLR | |||
NFPAIKMGCSDVDFPEGRNEIVVEDCFWNKNLPAGLDYLDCLMRCMPCEFRPEYLVFLNVRCYKHEKLWE | |||
GIQSLGSLEEMDLSESENLTEIPDLSKATNLKHLYLNNCKSLVTLPSTIGNLQKLVRLEMKECTGLEVLP | |||
TDVNLSSLETLDLSGCSSLRTFPLISKSIKWLYLENTAIEEILDLSKATKLESLILNNCKSLVTLPSTIG | |||
NLQNLRRLYMKRCTGLEVLPTDVNLSSLGILDLSGCSSLRTFPLISTNIVWLYLENTAIGEVPCCIEDFT | |||
RLRVLLMYCCQRLKNISPNIFRLRSLMFADFTDCRGVIKALSDATVVATMEDSVSCVPLSENIEYTCERF | |||
WGELYGDGDWDLGTEYFSFRNCFKLDRDARELILRSCFKPVALPGGEIPKYFTYRAYGDSLTVTLPRSSL | |||
SQSFLRFKACLVVDPLSEGKGFYRYLEVNFGFNGKQYQKSFLEDEELEFCKTDHLFFCSFKFESEMTFND | |||
VEFKFCCSNRIKECGVRLMYVSQETEYNQQTTRSKKRMRMTSGTSEEYINLAGDQIVADTGLAALNMELS | |||
LGEGEASSSTSLEGEALSVDYMITKEQDEDIPFLDPVSDGTWRSFYSAE" | "TIR-NBS-LRR class disease resistance protein [Arabidopsis | ||
thaliana]." | |||
Cf | peanut | 60116683|gb|AAX14284.1| resistance protein Cf [Arachis hypogaea] | |
SNKLHGPMGCPKDNGLWNMIQIVDAAFNNFSGELPVKWFRGWKKMISNDDGANSELSNIQFGRDNSDPIY | |||
YQDSVTVISKCYEMELVKILTIFTSIDFSY" | Organization and evolution of resistance gene analogs in peanut | ||
Proteins from | |||
pathway | |||
HSP90 | Tabacum | 110083391|dbj|BAE97400.1| heat shock protein 90 [Nicotiana tabacum] | |
MADTETFAFQAEINQLLSLIINTFYSNKEIFLRELISNSSDALDKIRFESLTDKSKLDAQPELFIHIIPD | |||
KTNNSLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTK | |||
HNDDEQYVWESQAGGSFTVTRDTSGENLGRGTKITLFLKEDQLEYLEERRLKDLIKKHSEFISYPISLWV | |||
EKTIEKEISDDEEEEEKKDEEGKVEEVDEEKEMEEKKKKKVKEVSNEWSLVNKQKPIWMRKPDEITKEEY | |||
AAFYKSLTNDWEEHMAVKHFSVEGQLEFKAILFVPKRAPFDLFDTRKKPNNIKLYVRRVFIMDNCEELIP | |||
EYLSFVKGIVDSEDLPLNISREMLQQNKILKVIRKNLVKKCVELFFEIAENKEDYNKFYEAFSKNLKLGI | |||
HEDSQNRSKFAELLRYHSTKSGDEMTSLKDYVTRMKEGQNDIYYITGESKKAVENSPFLEKLKKKGYEVL | |||
YMVDAIDEYSIGQLKEFEGKKLVSATKEGLKLDESEDEKKKQEELKEKFEGLCKVIKDVLGDKVEKVVVS | |||
DRVVDSPCCLVTGEYGWTANMERIMKAQALRDSSMAGYMSSKKTMEINPENAIMEELRKRADADKNDKSV | |||
KDLVLLLFETALLTSGFSLEEPNTFGNRIHRMLKLGLSIDDDSGDADVDMPALEDPEADAEGSKMEEVD" | "MAP Kinases Function Downstream of HSP90 and Upstream of | ||
Mitochondria in TMV Resistance Gene N-Mediated Hypersensitive Cell | |||
Death" | |||
Rar1 | 21552979|gb|AAM62409.1|AF480487_1 Rar1 [Nicotiana tabacum] | ||
MERLRCQRIGCNATFTEDDNPENSCTYHESGPLFHDGMKKWSCCKKSSHDFSLFLEIPGCKIGKHTTEKP | |||
VIANPAANRNRAIPAPTSTTNVSPKEACPRCRQGFFCSDHGSQPREVIPKASNTVTSVPSESNTDIQQCH | |||
PAPVKKKVDINEPQICKNKGCGKTFTEKENHDTACSYHPGPAIFHDRMRGWKCCDIHVKEFDEFMSISPC | |||
TTGWHNASPAS" | "Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for | ||
N-mediated resistance to tobacco mosaic virus" | |||
SGT1 | 17017306|gb|AAL33610.1|AF439974_1 SGT1 [Hordeum vulgare] | ||
MAAAAASDLESKAKEAFVDDDFELAAELYTQAIEAGPATAELYADRAQAHIKLGSYTEAVADANKAIELD | |||
PSMHKAYLRKGSACIKLEEYQTAKAALEVGSSYASGDSRFTRLMKECDDRIAEEASQAPVKNAAAAVAPA | |||
TSSGATTVVTEAEDQDGENMENAQPTVEVPSKPKYRHDYYNTPTEVVLTIFAKGVPADSVVVDFGEQMLS | |||
VSIELPGEEPYHFQPRLFSKIVPDKCKYTVLSTKVEIRLAKAEPVTWTSLDYTGKPKAPQKINVPAESAQ | |||
RPSYPSSKSKKDWDKLEAEVKKQEKDEKLDGDAALNKFFREIYSDADEDMRRAMMKSFVESNGTVLSTNW | |||
KDVGKKTVEGSPPDGMELKKWEY" | "The RAR1 interactor SGT1, an essential component of R | ||
gene-triggered disease resistance" | |||
EDS1 | 62183961|gb|AAX73302.1| EDS1 [Solanum lycopersicum] | ||
MVKIGEGIEVRDELIKKTCNLTMEAHNLSPGKPYIYKKINGSTDVVFAFAGTLSSDGWYSNTSFGEKEIN | |||
TTLFPSLRSVGTDEVAKVNEVFATRFEEILDKSSLKNEVEKAMLEGRQVVFAGHSSGGAIAILAALWCLE | |||
CCRTRPNGDMLLHPYCMTFGSPLVGNKIWSHALRRENWARYFLHFVMKYDVVPRMMLAPLSSIQELLQVI | |||
SPFINPKSQYYQHEAVARSSHASNFFMTVMRSASSVASYDACNLKGCTNLLLETVSNIVQLSPYRPFGTY | |||
IFCTGNRKLVVVENPDAVLQLLFYSSQLSSEAEAAVVVPRSLNDHLLYKNEMQDSLEMQDVLHLNNLTDI | |||
PLSSNVDPSMNSALNDLGLSTRARLCLRAAGEWEKQKKKNEEKIEQNKRSIRDALSKIQEYQTKCDIRKV | |||
GYYDAFKIQNTDDDFNANVRRLELAGIWDEIIEMLKRYELPDSFEGRRDWIELGTQFRRQVEPLDIANYY | |||
RHLKNEDTGPYLIRARPKRYRFTQRWLEHFDRVQAGARSESCFWAEVEELRNKPFAQVQDRVLNLETAAN | |||
GWIQSSLLGDDIFFPESTYTKWWKTLPPQHKQASWVSRKITP" | "EDS1 in tomato is required for resistance mediated by TIR-class R | ||
genes and the receptor-like R gene V" | |||
NPK1 | |||
MEK1 | |||
NQK1 | 12718822|dbj|BAB32405.1| NQK1 MAPKK [Nicotiana tabacum] | ||
MKTTKPLKELKLSVPAQDTPISSFLTASGTFHDGDLLLNQKGLRLISEENESPASETKEIDLQFSLEDLE | |||
TIKVIGKGSGGVVQLVRHKWVGTLFALKVIQMTIQEDIRKQIVQELKINQASQCSHVVVCYHSFYHNGAI | |||
SLVLEYMDRGSLADVIRQLKTILEPYLAVVCKQVLQGLVYLHNERHVIHRDIKPSNLLVNHKGEVKITDF | |||
GVSAMLASSMGQRDTFVGTYNYMAPERISGSTYDYKSDIWSLGMVILECAIGRFPYIQSEDQQAWPSFYE | |||
LLEAIVSSPPPSAPADQFSPEFCSFVSACIQKDPRDRSSALDLLSHPFIKKFEDKDIDFGILVSSLEPPV | |||
NFPR" | "NQK1/NtMEK1 is a MAPKK that acts in the NPK1 MAPKKK-mediated MAPK | ||
cascade and is required for plant cytokinesis" | |||
MEK2 | 12484128|gb|AAG53979.1|AF325168_1 mitogen-activated protein kinase 2 [Nicotiana tabacum] | ||
MRPLQPPPPAAAATTSSSTTASPMPPPPSRNRPRRRTDLTLPLPQRDPALAVPLPLPPTSAPSSSSSSSS | |||
SPLPTPLNFSELERINRIGSGAGGTVYKVLHRPTGRLYALKVIYGNHEDSVRLQMCREIEILRDVDNPNV | |||
VRCHDMFDHNGEIQVLLEFMDKGSLEGIHIPKESALSDLTRQVLSGLYYLHRRKIVHRDIKPSNLLINSR | |||
REVKIADFGVSRVLAQTMDPCNSSVGTIAYMSPERINTDLNHGQYDGYAGDIWSLGVSILEFYLGRFPFS | |||
VGRSGDWASLMCAICMSHGTAPANASREFRDFIACCLQRDPARRWTAVQLLRHPFITQNSPAATTTGNMM | |||
PLPNQVHQPAHQLLPPPPHFSS" | "Activation of a mitogen-activated protein kinase pathway is | ||
involved in disease resistance in tobacco" | |||
NTF6 | 2499616|sp|Q40531.1|NTF6_TOBAC RecName: Full=Mitogen-activated protein kinase homolog NTF6; AltName: Full=P43 | ||
MENETNEKLEIKGIPTHEGKYVEYNVLGNFFEVTSKYIPPIQPVGRGAYGMVCCATNSETKEEVAIKKIG | |||
NAFENRIDAKRTLREIKLLSHMDHENIIKIKDIVRPPDREEFNDVYIVYELMDTDLHQIIRSSQALTDDH | |||
CQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEADFMTEYVVTRWYRAPELL | |||
LNCTEYTAAIDIWSVGCILMELIKREPLFPGRDYAQQLGLIIALLGSPEDSDLGFLRSDNARKYVKHLPR | |||
VPRHPFSQKFPDVSPLALDLAERMLVFDPAKRITVEDALNHPFLISLHEINEEPVCDSPFNFDFEQASLS | |||
EDDIKELIWNEALKFDPNTMK" | "Molecular cloning, functional expression in Escherichia coli, and | ||
characterization of multiple mitogen-activated-protein kinases from | |||
tobacco" | |||
NRK1 | 12718824|dbj|BAB32406.1| NRK1 MAPK [Nicotiana tabacum] | ||
MENETNEKLEIKGVPTHEGKYVEYNVLGNFFEVTSKYIPPIQPVGRGAYGMVCCATNSETKEEVAIKKIG | |||
NAFENRIDAKRTLREIKLLSHMDHENIIKIKDIVRPPDREEFNDVYIVYELMDTDLHQIIRSSQALTEDH | |||
CQYFLYQLLRGLKYVHSANVLHRDLKPSNLLLNANCDLKICDFGLARTTSEADFMTEYVVTRWYRAPELL | |||
LNCTEYTAAIDIWSVGCILMELIKREPLFPGRDYAQQLGLIIALLGSPEDSDLGFLRSDNARKYVKHLPR | |||
VPRQPFSQKFPDVSPLALDLAERMLVFDPAKRITVEDALNHPFLISLHEINEEPVCDSPFNFDFEQASLS | |||
EDDIKELIWNEALKFDPNTMK" | "NQK1/NtMEK1 is a MAPKK that acts in the NPK1 MAPKKK-mediated MAPK | ||
cascade and is required for plant cytokinesis" | |||
WIRK | not found | ||
SIPK | same as MEK2 | ||
NPR1 | 21552981|gb|AAM62410.1|AF480488_1 NPR1 [Nicotiana tabacum] | ||
MDNSRTAFSDSNDISGSSSICCIGGGMTEFFSPETSPAEITSLKRLSETLESIFDASLPEFDYFADAKLV | |||
VSGPCKEIPVHRCILSARSPFFKNLFCGKKEKNSSKVELKEVMKEHEVSYDAVMSVLAYLYSGKVRPSPK | |||
DVCVCVDNDCSHVACRPAVAFLVEVLYTSFTFQISELVDKFQRHLLDILDKTAADDVMMVLSVANICGKA | |||
CERLLSSCIEIIVKSNVDIITLDKALPHDIVKQITDSRAELGLQGPESNGFPDKHVKRIHRALDSDDVEL | |||
LQMLLREGHTTLDDAYALHYAVAYCDAKTTAELLDLALADINHQNSRGYTVLHVAAMRKEPKIVVSLLTK | |||
GARPSDLTSDGRKALQIAKRLTRLVDFSKSPEEGKSASNDRLCIEILEQAERRDPLLGEASVSLAMAGDD | |||
LRMKLLYLENRVGLAKLLFPMEAKVAMDIAQVDGTSEFPLASIGKKMANAQRTTVDLNEAPFKIKEEHLN | |||
RLRALSRTVELGKRFFPRCSEVLNKIMDADDLSEIAYMGNDTAEERQLKKQRYMELQEILTKAFTEDKEE | |||
YDKTNNISSSCSSTSKGVDKPNKLPFRK" | "Tobacco Rar1, EDS1 and NPR1/NIM1 like genes are required for | ||
N-mediated resistance to tobacco mosaic virus" | |||
WRK1 | NF | ||
WRK2 | NF | ||
WRK3 | NF | ||
MYB1 | 45239436|gb|AAS55703.1| MYB1, partial [Nicotiana benthamiana] | ||
VRAPCCEKMGLKKGPWTPEEDQILISFIQTNGHGNWRALPKQAGLLRCGKSCRLRWTNYLRPDIKRGNFT | |||
KEEEDTIIQLHEMLGNRWSAIAGKLPGRTDNEIKNVWHTHLKKKLKDYKPPQNSKRHSKNHDSKGPTTSR | |||
SSNNSDLTTQKHIDSPV" | "Involvement of MEK1 MAPKK, NTF6 MAPK, WRKY/MYB transcription | ||
factors, COI1 and CTR1 in N-mediated resistance to tobacco mosaic | |||
virus" |