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- Tuning genetic control through promoter engineering (14:57, 25 September 2007)
- Growth Yield Pathway (14:59, 25 September 2007)
- Post-transcriptional Regulation Technologies (23:12, 1 October 2007)
- Will DeLoache - Synthetic Biology Seminar (02:06, 7 October 2007)
- Emma Garren (04:13, 8 October 2007)
- Danielle Jordan - Synthetic Biology Seminar (20:54, 8 October 2007)
- Construction of a genetic toggle switch in E. coli (14:16, 9 October 2007)
- Rational design of memory in eukaryotic cells (14:26, 9 October 2007)
- Wiki Topic (15:20, 11 October 2007)
- Emma Garren - Logic Gates (17:15, 28 October 2007)
- Helpful wiki sites (18:16, 14 November 2007)
- CellularMemory:Section 2 (20:31, 14 November 2007)
- CellularMemory:Section 3 (20:31, 14 November 2007)
- CellularMemory:Section 4 (20:31, 14 November 2007)
- CellularMemory:Section 5 (20:31, 14 November 2007)
- CellularMemory:Positive/Negative Feedback Models (20:55, 14 November 2007)
- Figure 1. (00:32, 20 November 2007)
- Figure 2. (00:32, 20 November 2007)
- Blah (02:34, 20 November 2007)
- Repressilator (03:57, 20 November 2007)
- Figure 6. Modularity of the AND gate. (05:35, 20 November 2007)
- Figure 1. Schematic representation of AND gate. (05:35, 20 November 2007)
- Figure 2. Function of the AND gate. (05:36, 20 November 2007)
- Figure 1. O-ribosomes and Boolean logic. (07:59, 20 November 2007)
- Quorum Sensing (08:36, 20 November 2007)
- NOT IF gate (09:35, 20 November 2007)
- NOT IF IF gate (09:36, 20 November 2007)
- NAND gate (09:36, 20 November 2007)
- OR gate (09:37, 20 November 2007)
- NOR gate (09:37, 20 November 2007)
- INVERTER gate (09:38, 20 November 2007)
- Logic Gates: Symbols and Truth Tables (09:55, 20 November 2007)
- Transfer function model (10:15, 20 November 2007)
- Riboswitch (10:54, 20 November 2007)
- Laura Voss - Synthetic Biology Seminar (13:29, 20 November 2007)
- Stochasticity in Gene Expression- Mike Waters (16:23, 20 November 2007)
- Gene Knockout for Lycopene Overproduction (19:41, 5 December 2007)
- Davidson College Synthetic Biology Seminar (Fall 2007) (20:47, 5 December 2007)
- Noise as a Variable (00:48, 6 December 2007)
- Figure 2. Logical design of the molecular computer. (03:55, 6 December 2007)
- Figure 4. Two-input AND gate. (03:57, 6 December 2007)
- Figure 3. Operation of the molecular computer. (05:32, 6 December 2007)
- Restoration: Amplification Gate (06:09, 6 December 2007)
- Restoration: Thresholding Gate (06:10, 6 December 2007)
- Term paper wiki (14:23, 6 December 2007)
- Finite Number Effect (14:33, 6 December 2007)
- Translational Bursting (14:40, 6 December 2007)
- Stochasticity in a Eukaryotic Background (14:50, 6 December 2007)
- Deterministic vs. Stochastic Models (14:56, 6 December 2007)
- Citations (17:26, 6 December 2007)
- Manipulation of Stochasticity (17:26, 6 December 2007)
- A Simple Method for Highly Evolved Enzymes (17:56, 6 December 2007)
- Global Transcriptome Machinery Engineering (17:57, 6 December 2007)
- CellularMemory:Biological Designs (18:44, 6 December 2007)
- Modeling Reporter Activity (19:20, 6 December 2007)
- Predicting Gene Circuit Activity (19:21, 6 December 2007)
- CellularMemory:Mathematical Models (19:23, 6 December 2007)
- CellularMemory:Hysteresis in Mammalian Cells (19:46, 6 December 2007)
- CellularMemory:Conclusions (20:00, 6 December 2007)
- CellularMemory:Permanent Memory in Eukaryotes (20:01, 6 December 2007)
- Semi-Synthetic DNA Shuffling and Doramectin (21:26, 6 December 2007)
- Strand-Displacement (21:36, 6 December 2007)
- Ribozyme Switch (21:57, 6 December 2007)
- Applications of Ribozymes in Synthetic Systems - Danielle Jordan (22:03, 6 December 2007)
- Nanocircles (19:25, 8 December 2007)
- Helix-Slipping (19:28, 8 December 2007)
- Promoter Kinetics (15:46, 10 December 2007)
- Modeling Stochasticity (15:53, 10 December 2007)
- Origins and Characterization of Stochasticity (15:55, 10 December 2007)
- Eukaryotic Models (15:58, 10 December 2007)
- Noise in Synthetic Cascades (16:03, 10 December 2007)
- Noise in Feedback Loops (16:04, 10 December 2007)
- Evolved Stochasticity? (16:08, 10 December 2007)
- Correlative Data (16:08, 10 December 2007)
- Concluding Remarks (16:12, 10 December 2007)
- Term Paper Wiki (16:13, 10 December 2007)
- Promoters and Reporters in Synthetic Biology (16:37, 10 December 2007)
- Modeling Promoter Activity (16:46, 10 December 2007)
- Directed Evolution and Synthetic Biology - Hunter Stone (16:56, 10 December 2007)
- Random Gene Knockout to Maximize Product Yield (17:11, 10 December 2007)
- Antiswitches (14:51, 11 December 2007)
- Riboregulators (15:30, 11 December 2007)
- Riboswitches (15:45, 11 December 2007)
- Post-transcriptional Regulation Technologies - Erin Zwack (15:47, 11 December 2007)
- Ribozyme vesicles (16:25, 11 December 2007)
- CellularMemory:References (14:49, 13 December 2007)
- Medical Applications of Synthetic Biology - Samantha Simpson (19:36, 13 December 2007)
- CellularMemory:Main Page (20:08, 13 December 2007)
- Logic Gates - Emma Garren (02:33, 14 December 2007)
- CellularMemory:Toggle Switch (18:09, 14 December 2007)
- Paper Discussion 9/25 (16:38, 27 March 2008)
- Davidson College (21:44, 30 April 2008)
- Modeling and Calculus for Life Scientists (02:09, 7 May 2008)
- Davidson Missouri W/Primer dimer (15:02, 27 May 2008)
- Using Amp and Amp^R as communication (17:46, 30 May 2008)
- Resuspending Oligos (19:14, 9 June 2008)
- Direct Synthesis with Overlapping Oligos (20:36, 12 June 2008)
- Parts from the registry (00:12, 18 June 2008)
- DNA Sequences of Relevant Parts (00:17, 18 June 2008)
- Divide and Conquer Biological Challenges (14:11, 18 June 2008)
- Status Of Building Parts (14:14, 18 June 2008)
- Nystatin Plates (16:46, 18 June 2008)
- Oligo design for XOR Hybrid Promoters (16:51, 18 June 2008)
- Oligos to Build (20:32, 20 June 2008)
- Contact A Team Member (12:52, 24 June 2008)
- Team Projects (19:42, 25 June 2008)
- Parts to send to Davidson on Thursday, 6/26/08 (19:35, 26 June 2008)
- Test Tet repression (18:56, 30 June 2008)
- LuxR/cI Test and Outcome (19:44, 30 June 2008)
- PMnt/Lac (20:09, 30 June 2008)
- Test pLsrR/cI (14:05, 1 July 2008)
- Test page (14:17, 1 July 2008)
- LuxR/cI (16:17, 2 July 2008)
- Mnt/Lac (21:20, 2 July 2008)
- Designing XOR Gates - two campus approach (13:38, 3 July 2008)
- Needed From Davidson (16:28, 9 July 2008)
- Test pLsrA/cI (14:54, 11 July 2008)
- Test pLasR/cI (14:54, 11 July 2008)
- Test pLuxR/cI (20:17, 15 July 2008)
- Test pMnt/Lac (16:58, 16 July 2008)
- Test XOR Hybrid Promoters (15:27, 18 July 2008)
- Davidson Projects with Updates (00:05, 22 July 2008)
- LasR/cI (18:24, 22 July 2008)
- Matlab M-files for Math Models (20:32, 25 July 2008)
- Tests and Analysis (20:35, 25 July 2008)
- Math Modeling Pages (21:16, 25 July 2008)
- LsrA/cI (15:27, 28 July 2008)
- Mnt/Tet (16:37, 4 August 2008)
- Test Mnt/Tet promoter (16:43, 4 August 2008)
- Build XOR Gate (15:24, 6 August 2008)
- Parts needed for XOR (17:56, 6 August 2008)
- 2 misc. RNA genes (03:55, 2 September 2008)
- RRNA operon (06:59, 2 September 2008)
- KEGG (15:10, 4 September 2008)
- E-value (03:18, 9 September 2008)
- Score (03:20, 9 September 2008)
- Identity (03:25, 9 September 2008)
- Alignment (03:31, 9 September 2008)
- Alignment Instructions (03:44, 9 September 2008)
- Gaps (03:47, 9 September 2008)
- Pairwise Alignment (06:14, 9 September 2008)
- HMM logo (06:49, 9 September 2008)
- Key Functional Residues (07:04, 9 September 2008)
- Significant Matches (07:24, 9 September 2008)
- Module 8 Instructions (14:35, 9 September 2008)
- Evidence of Horizontal Gene Transfer (Module Eight) Instructions (15:17, 9 September 2008)
- Gene Annotation Template (16:26, 9 September 2008)
- FAQ and General Questions (18:02, 10 September 2008)
- General Questions (15:36, 11 September 2008)
- Page for Annotated Genes (05:22, 16 September 2008)
- Consensus Shine Dalgarno (02:53, 17 September 2008)
- Phi80 Integration Protocol (18:07, 18 September 2008)
- TRNA Genes Check List (14:04, 25 September 2008)
- Test (14:56, 2 October 2008)
- Davidson Missouri W/Double Digest Guide (19:28, 6 October 2008)
- Wcdseq pLuxLas1 (19:41, 7 October 2008)
- Wcdseq pLuxLas2 (19:41, 7 October 2008)
- Wcdseq pLuxLas3 (19:42, 7 October 2008)
- Wcdseq B0015 VF2 (19:42, 7 October 2008)
- Wcdseq J23100 VF2 (19:43, 7 October 2008)
- Wcdseq S03954 VR (19:43, 7 October 2008)
- Wcdseq S03983 VF2 (19:43, 7 October 2008)
- Wcdseq S03983 VR (19:43, 7 October 2008)
- Missing tRNA-trp gene found (00:37, 14 October 2008)
- Online tools that support the design of new biobrick parts (19:54, 23 October 2008)
- Team Description (18:18, 25 October 2008)
- Highlights (18:20, 25 October 2008)
- Project Abstract (18:21, 25 October 2008)
- Links (18:32, 25 October 2008)
- IGEM2008 (18:15, 27 October 2008)
- Home Page (23:42, 27 October 2008)
- New parts contributed to the Registry (23:50, 27 October 2008)
- Improvement of pre-existing Registry parts (01:00, 28 October 2008)
- Experience gained on new Registry parts (01:00, 28 October 2008)
- Cellular Signaling Systems (14:42, 28 October 2008)
- Biology Pages (14:44, 28 October 2008)
- E. nigma Project (14:46, 28 October 2008)
- Describe cellular communication systems used (14:53, 28 October 2008)
- Present Hybrid Promoter Designs cartoon fashion (3 major different types) (14:58, 28 October 2008)
- Discuss need for delayed growth (common problem with many projects in the past) (15:10, 28 October 2008)
- Las (15:13, 28 October 2008)
- Lux (15:14, 28 October 2008)
- Lsr (15:14, 28 October 2008)
- XOR logic gates designed, constructed, tested (15:16, 28 October 2008)
- Describe different design architectures (15:18, 28 October 2008)
- Define XOR logic gates and how it was used with biological inputs and outputs (15:39, 28 October 2008)
- Present concept of XOR and the autoinducers (15:41, 28 October 2008)
- Viz-A-Brick: A new way to visualize the Registry (15:45, 28 October 2008)
- Hybrid promoters designed, constructed, tested (15:51, 28 October 2008)
- Show movie of growth and model of same (15:54, 28 October 2008)
- Modeling of biological hash function (16:29, 28 October 2008)
- Links to Biology pages (16:54, 28 October 2008)
- KCM Preparation (23:25, 30 October 2008)
- Amylases (03:19, 6 November 2008)
- Xylose (glucose) isomerase) (15:06, 6 November 2008)
- Lipases (15:48, 6 November 2008)
- Amino acids (16:16, 6 November 2008)
- Proteases (07:20, 7 November 2008)
- Cellulase (15:56, 13 November 2008)
- Protein Export (16:15, 18 November 2008)
- Ribosomal Binding Site Conservation (00:42, 19 November 2008)
- Gene Length Histograms (15:48, 3 December 2008)
- Venn diagrams (15:51, 3 December 2008)
- Chitinase (15:13, 4 December 2008)
- Phage Proteins (15:57, 4 December 2008)
- Alternative Start Codons (16:00, 4 December 2008)
- GC content of the contigs (15:39, 5 December 2008)
- Shine Dalgarno Sequence Logo (11:37, 9 December 2008)
- Halorhabdus utahensis Genome (19:29, 11 December 2008)
- Will Notebook1 (19:27, 19 December 2008)
- Wcdseq pLuxprime VR (22:49, 14 March 2009)
- Wcdseq pLuxLas VR (22:50, 14 March 2009)
- WillSequencing (22:56, 14 March 2009)
- What role can physical modeling of protein structure play in our project? (18:03, 3 April 2009)
- Can we use suppressor tRNAs to encode logical operators (suppressor suppressor logic, SSL)? (18:38, 14 April 2009)
- How many copies are carried per cell? (18:24, 25 April 2009)
- Will DeLoache Notebook (19:41, 30 April 2009)
- WillFiles (19:43, 30 April 2009)
- What is msDNA? (18:16, 4 May 2009)
- What constructs are we testing? (16:08, 5 May 2009)
- What school districts do we have access to? (16:16, 5 May 2009)
- Where is the Synthetic Biology page we want high school teachers to use after the survey? (16:20, 5 May 2009)
- Will Notebook2 (18:47, 5 May 2009)
- Can we use promoter strength/opposite directions to subtract? Clif Davis (16:02, 11 May 2009)
- What other cool reporters are there? (Discrete On/Off or Continuous) Bryce Szczepanik (16:03, 11 May 2009)
- How is msDNA normally produced? (06:33, 15 May 2009)
- How is msDNA stored in E. coli? (06:35, 15 May 2009)
- Genomic Insertion Protocol (15:42, 15 May 2009)
- Kin Lau Notebook (21:54, 18 May 2009)
- Can we get bacteria to solve a problem large enough to challenge a person? (02:49, 19 May 2009)
- What other math problems (e.g. NP- complete) are accessible to us? Siya Sun (03:28, 19 May 2009)
- 3SAT (17:49, 20 May 2009)
- What is the sequence of bacterial reverse transcriptase and can we clone that gene? (20:21, 20 May 2009)
- What other math problems (e.g. NP- complete) are accessible to us? Annie Siya Sun (19:34, 25 May 2009)
- Can we redesign the normal msDNA pathway to produce new segments of DNA of our choosing? (13:52, 26 May 2009)
- Davidson/Missouri Western iGEM2008 (15:19, 26 May 2009)
- What are other available reverse transcriptases? (19:57, 26 May 2009)
- Examples of Metabolic Pathways in E.coli (18:45, 27 May 2009)
- Plasmid Creation (02:19, 28 May 2009)
- XOR gate design involving Omp system (14:27, 28 May 2009)
- How has 3SAT been addressed with a DNA computer? Can we use those methods? (14:21, 1 June 2009)
- IGEM Notebook (6/3/09 - 7/?/09) (13:24, 3 June 2009)
- IGEM Notebook (6/2/09 - 7/?/09) (13:44, 3 June 2009)
- Leland Taylor Notebook (13:46, 3 June 2009)
- Romina Clemente Notebook (13:56, 3 June 2009)
- Can we solve a 3-SAT problem with supressor logic? (20:12, 3 June 2009)
- What naming system are we going to use for the suppressor tRNAs? (20:38, 3 June 2009)
- How are we going to build the 5-mer BioBricks? (14:31, 4 June 2009)
- How do you build the tRNA construct? (20:51, 5 June 2009)
- What role can physical modeling of proteins play in our project? Eric Sawyer (20:41, 8 June 2009)
