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  1. (hist) ‎Group 3 Liver ‎[392 bytes]
  2. (hist) ‎Bacterial Transformation for Bio113 ‎[397 bytes]
  3. (hist) ‎Number of steps in proposed network pathways ‎[398 bytes]
  4. (hist) ‎Missouri Western/Davidson iGEM2010 ‎[407 bytes]
  5. (hist) ‎Catherine Doyle's Notebook ‎[407 bytes]
  6. (hist) ‎Davidson Missouri W/Amber Shoecraft ‎[408 bytes]
  7. (hist) ‎Davidson Missouri W/Jordan Baumgardner ‎[413 bytes]
  8. (hist) ‎KEGG ‎[413 bytes]
  9. (hist) ‎Davidson Missouri W/Jessica Treece ‎[419 bytes]
  10. (hist) ‎J-GGA Scaffold 2.0 Primer ‎[421 bytes]
  11. (hist) ‎How is it connected to FastQC? ‎[422 bytes]
  12. (hist) ‎Freeze glycerol stocks of E. coli ‎[422 bytes]
  13. (hist) ‎Significant Matches ‎[425 bytes]
  14. (hist) ‎Figure 3. Operation of the molecular computer. ‎[426 bytes]
  15. (hist) ‎Nystatin Plates ‎[427 bytes]
  16. (hist) ‎Haloarcula vallismortis Blasting Results for Virus 3 ‎[429 bytes]
  17. (hist) ‎LongAmp PCR ‎[433 bytes]
  18. (hist) ‎NHE Apr 5 Notes ‎[443 bytes]
  19. (hist) ‎Davidson Missouri W/Mike Waters ‎[446 bytes]
  20. (hist) ‎Ethanol Precipitation of Vector DNA ‎[450 bytes]
  21. (hist) ‎Dream Gene ‎[450 bytes]
  22. (hist) ‎Haloarcula sinaiiensis Blasting Results for Virus 3 ‎[451 bytes]
  23. (hist) ‎Gene Expression Noise ‎[454 bytes]
  24. (hist) ‎Julia Preziosi ‎[456 bytes]
  25. (hist) ‎March 31, 2016 ‎[457 bytes]
  26. (hist) ‎Template Preparation for RT-qPCR ‎[459 bytes]
  27. (hist) ‎NHE Mar 10 Notes ‎[463 bytes]
  28. (hist) ‎Papers about randomness ‎[465 bytes]
  29. (hist) ‎Golden Gate ‎[465 bytes]
  30. (hist) ‎How many copies are carried per cell? ‎[466 bytes]
  31. (hist) ‎DM Notes 4.7.16 ‎[469 bytes]
  32. (hist) ‎Noise as a Variable ‎[472 bytes]
  33. (hist) ‎FAQ and General Questions ‎[472 bytes]
  34. (hist) ‎Phage Proteins ‎[477 bytes]
  35. (hist) ‎Morgan ‎[480 bytes]
  36. (hist) ‎Wcdseq pLuxLas1 ‎[497 bytes]
  37. (hist) ‎Haloarcula vallismortis ‎[499 bytes]
  38. (hist) ‎Test XOR Hybrid Promoters ‎[500 bytes]
  39. (hist) ‎Nick Elder ‎[500 bytes]
  40. (hist) ‎Mathematics/Netlogo Models ‎[506 bytes]
  41. (hist) ‎JP Mar 10 16 ‎[509 bytes]
  42. (hist) ‎Xylose (glucose) isomerase) ‎[518 bytes]
  43. (hist) ‎Figure 1. O-ribosomes and Boolean logic. ‎[521 bytes]
  44. (hist) ‎Analog computing ‎[521 bytes]
  45. (hist) ‎Dylan Maghini ‎[523 bytes]
  46. (hist) ‎DM Notes 1.26.16 ‎[523 bytes]
  47. (hist) ‎Gibson Assembly ‎[524 bytes]
  48. (hist) ‎Fruit size ‎[526 bytes]
  49. (hist) ‎Phi80 Integration Protocol ‎[529 bytes]
  50. (hist) ‎Score ‎[535 bytes]
  51. (hist) ‎Prepare PCR product for sequencing ‎[535 bytes]
  52. (hist) ‎What does TopHat do? ‎[540 bytes]
  53. (hist) ‎Promoter Strength Metric ‎[545 bytes]
  54. (hist) ‎Ladder problems ‎[548 bytes]
  55. (hist) ‎JP Feb 16 16 ‎[550 bytes]
  56. (hist) ‎March 24, 2016 ‎[553 bytes]
  57. (hist) ‎Davidson Missouri W/Andrew Martens ‎[555 bytes]
  58. (hist) ‎Dylan & Jared ‎[560 bytes]
  59. (hist) ‎Davidson Missouri W/Primer dimer ‎[576 bytes]
  60. (hist) ‎Cas-Protein aa sequences ‎[577 bytes]
  61. (hist) ‎Design of C dog oligos in J-GGA Scaffold for Scaffold 2.0 ‎[577 bytes]
  62. (hist) ‎Cold tolerance ‎[587 bytes]
  63. (hist) ‎MWSU To Do ‎[591 bytes]
  64. (hist) ‎CYP450s ‎[593 bytes]
  65. (hist) ‎Housekeeping genes for intestines ‎[599 bytes]
  66. (hist) ‎JP Resources ‎[599 bytes]
  67. (hist) ‎TSS Competent Cells ‎[603 bytes]
  68. (hist) ‎May 28, 2014 ‎[604 bytes]
  69. (hist) ‎Missouri Western/Davidson SynBio 2011 ‎[606 bytes]
  70. (hist) ‎Summer 2012 Outcomes ‎[606 bytes]
  71. (hist) ‎EXPLORATION OF THE IMPORTANT FINDINGS ‎[607 bytes]
  72. (hist) ‎Figure 1. Schematic representation of AND gate. ‎[608 bytes]
  73. (hist) ‎Complete Edge Status ‎[610 bytes]
  74. (hist) ‎Will DeLoache Notebook ‎[614 bytes]
  75. (hist) ‎March 17, 2016 ‎[620 bytes]
  76. (hist) ‎Define XOR logic gates and how it was used with biological inputs and outputs ‎[622 bytes]
  77. (hist) ‎Present concept of XOR and the autoinducers ‎[622 bytes]
  78. (hist) ‎Haloarcula sp 33799 ‎[624 bytes]
  79. (hist) ‎3/24 ‎[631 bytes]
  80. (hist) ‎IGEM Notebook (6/2/09 - 7/?/09) ‎[639 bytes]
  81. (hist) ‎Davidson Missouri W/MWSU protocols ‎[640 bytes]
  82. (hist) ‎Figure 2. Function of the AND gate. ‎[648 bytes]
  83. (hist) ‎2/4 ‎[651 bytes]
  84. (hist) ‎Quorum Sensing ‎[655 bytes]
  85. (hist) ‎Malcolm Campbell ‎[658 bytes]
  86. (hist) ‎Group 1 intestines ‎[659 bytes]
  87. (hist) ‎Stochasticity in Gene Expression- Mike Waters ‎[663 bytes]
  88. (hist) ‎4 endonucleases ‎[663 bytes]
  89. (hist) ‎Growth Yield Pathway ‎[666 bytes]
  90. (hist) ‎Team Description ‎[668 bytes]
  91. (hist) ‎WEEK SIX (February 20 - 24) ‎[670 bytes]
  92. (hist) ‎What does Cuffdiff do? ‎[671 bytes]
  93. (hist) ‎WEEK ELEVEN (March 26 - 30) ‎[676 bytes]
  94. (hist) ‎NHE Feb 2 Notes ‎[681 bytes]
  95. (hist) ‎WEEK ONE (January 17 - 20) ‎[682 bytes]
  96. (hist) ‎What does Timmomatic do? ‎[683 bytes]
  97. (hist) ‎Haloferax denitrificans ‎[686 bytes]
  98. (hist) ‎Test pLuxR/cI ‎[693 bytes]
  99. (hist) ‎NHE Mar 24 Notes ‎[693 bytes]
  100. (hist) ‎Pipet Tip Olympic Records ‎[698 bytes]
  101. (hist) ‎Backwards Promotion and read-through transcription ‎[703 bytes]
  102. (hist) ‎2/15/18 ‎[703 bytes]
  103. (hist) ‎Alignment Instructions ‎[704 bytes]
  104. (hist) ‎Needed From Davidson ‎[709 bytes]
  105. (hist) ‎Figure 4. Two-input AND gate. ‎[712 bytes]
  106. (hist) ‎LuxR/cI Test and Outcome ‎[715 bytes]
  107. (hist) ‎Parsing Local Blast Results from your favorite database ‎[716 bytes]
  108. (hist) ‎Mitochondrial/Chloroplast Separation ‎[739 bytes]
  109. (hist) ‎HMM logo ‎[740 bytes]
  110. (hist) ‎Notes 2/23/16 ‎[740 bytes]
  111. (hist) ‎Haloarcula vallismortis Blast Results ‎[749 bytes]
  112. (hist) ‎IPCR ‎[751 bytes]
  113. (hist) ‎JP Jan 28 16 ‎[754 bytes]
  114. (hist) ‎Combinatorial promoter design for engineering noisy gene expression ‎[755 bytes]
  115. (hist) ‎Wcdseq pLuxLas2 ‎[761 bytes]
  116. (hist) ‎Haloarcula californiae ‎[761 bytes]
  117. (hist) ‎E-value ‎[762 bytes]
  118. (hist) ‎NHE Mar 8 Notes ‎[770 bytes]
  119. (hist) ‎Washing Beads ‎[774 bytes]
  120. (hist) ‎Comparison of Each Enzyme's Protein Sequences using blastp and clustalW. . . ‎[777 bytes]
  121. (hist) ‎Control of Gene Expression to Fit Model ‎[778 bytes]
  122. (hist) ‎Research ‎[779 bytes]
  123. (hist) ‎Noise in Feedback Loops ‎[786 bytes]
  124. (hist) ‎DM Notes 1.14.16 ‎[789 bytes]
  125. (hist) ‎Gel Electrophoresis for Bio113 ‎[790 bytes]
  126. (hist) ‎Network Research with Synthetic Biology ‎[793 bytes]
  127. (hist) ‎Wcdseq pLuxprime VR ‎[795 bytes]
  128. (hist) ‎Test pLasR/cI ‎[796 bytes]
  129. (hist) ‎GGA for BsmBI ‎[796 bytes]
  130. (hist) ‎Team Projects ‎[802 bytes]
  131. (hist) ‎DM Notes 3.10.16 ‎[805 bytes]
  132. (hist) ‎Cellulase ‎[813 bytes]
  133. (hist) ‎Contact A Team Member ‎[814 bytes]
  134. (hist) ‎WEEK SEVEN (February 27 - March 2) ‎[816 bytes]
  135. (hist) ‎JP Apr 07 16 ‎[816 bytes]
  136. (hist) ‎Katy Weinberg ‎[817 bytes]
  137. (hist) ‎Explaining My Project ‎[819 bytes]
  138. (hist) ‎DNA Sequencing at Eurofins ‎[825 bytes]
  139. (hist) ‎Protein of unknown function ( ‎[826 bytes]
  140. (hist) ‎Riboswitch ‎[831 bytes]
  141. (hist) ‎7) Two 'other' RNA genes ‎[833 bytes]
  142. (hist) ‎DM Notes 2.11.16 ‎[833 bytes]
  143. (hist) ‎GC content of the contigs ‎[838 bytes]
  144. (hist) ‎Diagnostic RP Digestion for Checking Insert Size ‎[839 bytes]
  145. (hist) ‎What does Cufflinks do? ‎[851 bytes]
  146. (hist) ‎J-GGA Scaffold Sequence ‎[852 bytes]
  147. (hist) ‎MWSU Research ‎[854 bytes]
  148. (hist) ‎Davidson Missouri W/Todd Eckdahl ‎[857 bytes]
  149. (hist) ‎Reducing Background from Double Digested Vector ‎[860 bytes]
  150. (hist) ‎Zymo Research Clean and Concentrate for Plasmid DNA ‎[861 bytes]
  151. (hist) ‎Nova Southeastern University ‎[865 bytes]
  152. (hist) ‎Links to Biology pages ‎[867 bytes]
  153. (hist) ‎Megan's Assignment ‎[868 bytes]
  154. (hist) ‎J-GGA Scaffold Sequences ‎[880 bytes]
  155. (hist) ‎WillFiles ‎[881 bytes]
  156. (hist) ‎How is it different from DESeq2? ‎[882 bytes]
  157. (hist) ‎DM Notes 2.25.16 ‎[886 bytes]
  158. (hist) ‎Davidson Missouri W/A. Malcolm Campbell ‎[889 bytes]
  159. (hist) ‎NHE Feb 4 Notes ‎[890 bytes]
  160. (hist) ‎Parts from the registry ‎[893 bytes]
  161. (hist) ‎Gradient/Standard PCR ‎[893 bytes]
  162. (hist) ‎What role can physical modeling of protein structure play in our project? ‎[894 bytes]
  163. (hist) ‎Wcdseq pLuxLas VR ‎[907 bytes]
  164. (hist) ‎March 8, 2016 ‎[921 bytes]
  165. (hist) ‎2/8/18 ‎[924 bytes]
  166. (hist) ‎Ramping up Programmed Evolution ‎[925 bytes]
  167. (hist) ‎Standard PCR ‎[934 bytes]
  168. (hist) ‎DM Notes 1.12.16 ‎[934 bytes]
  169. (hist) ‎Experience gained on new Registry parts ‎[945 bytes]
  170. (hist) ‎Common Restriction Sites ‎[947 bytes]
  171. (hist) ‎February 11, 2016 ‎[951 bytes]
  172. (hist) ‎Golden Gate Assembly Single Molecule Protocol ‎[954 bytes]
  173. (hist) ‎Mycobacterium phage Virus Hit from Spacer 5 in Crispr Two: Blast Alignment to Other Halophiles ‎[960 bytes]
  174. (hist) ‎Davidson Missouri W/Jim Dickson ‎[963 bytes]
  175. (hist) ‎Conserved hypothetical protein TIGR00162 (Megan Reilly) ‎[963 bytes]
  176. (hist) ‎Network Pathways Chart ‎[963 bytes]
  177. (hist) ‎Wcdseq B0015 VF2 ‎[966 bytes]
  178. (hist) ‎Wcdseq J23100 VF2 ‎[967 bytes]
  179. (hist) ‎Figure 6. Modularity of the AND gate. ‎[968 bytes]
  180. (hist) ‎Wcdseq pLuxLas3 ‎[970 bytes]
  181. (hist) ‎Mathematics ‎[974 bytes]
  182. (hist) ‎2/6/18 ‎[975 bytes]
  183. (hist) ‎CellularMemory:References ‎[979 bytes]
  184. (hist) ‎Can we get bacteria to solve a problem large enough to challenge a person? ‎[979 bytes]
  185. (hist) ‎Wcdseq S03983 VR ‎[980 bytes]
  186. (hist) ‎SOC Protocol for Transformations ‎[980 bytes]
  187. (hist) ‎Wcdseq S03954 VR ‎[981 bytes]
  188. (hist) ‎Wcdseq S03983 VF2 ‎[989 bytes]
  189. (hist) ‎Davidson Missouri W/CUGI Sequencing ‎[990 bytes]
  190. (hist) ‎Jan 12 Notes ‎[990 bytes]
  191. (hist) ‎DM Notes 2.16.16 ‎[991 bytes]
  192. (hist) ‎JP Feb 11 16 ‎[994 bytes]
  193. (hist) ‎Jan 12 ‎[995 bytes]
  194. (hist) ‎Restoration: Thresholding Gate ‎[998 bytes]
  195. (hist) ‎Restoration: Amplification Gate ‎[998 bytes]
  196. (hist) ‎Measuring Fluorescence in Bacteria ‎[1,000 bytes]
  197. (hist) ‎Davidson Missouri W/Backwards promotion and read-through transcription ‎[1,019 bytes]
  198. (hist) ‎Golden Gate Assembly Protocol for BsmB1 ‎[1,019 bytes]
  199. (hist) ‎Discuss need for delayed growth (common problem with many projects in the past) ‎[1,020 bytes]
  200. (hist) ‎Show movie of growth and model of same ‎[1,020 bytes]
  201. (hist) ‎Biological Noise and Possible Uses ‎[1,024 bytes]
  202. (hist) ‎NHE Jan 12 Notes ‎[1,024 bytes]
  203. (hist) ‎Protein of unknown function (DUF861) (Claudia M. Carcelen) ‎[1,026 bytes]
  204. (hist) ‎Using Amp and Amp^R as communication ‎[1,038 bytes]
  205. (hist) ‎BioBrick Digestions for Fragment and Vector Preparation ‎[1,047 bytes]
  206. (hist) ‎Synergy Machine Protocol for Bio113 ‎[1,050 bytes]
  207. (hist) ‎March 10, 2016 ‎[1,052 bytes]
  208. (hist) ‎Isolation of Genomic DNA from Bacteria ‎[1,059 bytes]
  209. (hist) ‎DM Notes 3.8.16 ‎[1,063 bytes]
  210. (hist) ‎T7RNAp information page. ‎[1,064 bytes]
  211. (hist) ‎J-GGA Scaffold 2.0 Sequence ‎[1,083 bytes]
  212. (hist) ‎JP Mar 17 16 ‎[1,086 bytes]
  213. (hist) ‎Repeating Eckdahl's 20-clone selection ‎[1,089 bytes]
  214. (hist) ‎DNA Sequencing at Iowa State University ‎[1,093 bytes]
  215. (hist) ‎Haloferax mucosum ‎[1,101 bytes]
  216. (hist) ‎Making a Restriction Site Nonfunctional using PCR ‎[1,105 bytes]
  217. (hist) ‎How is msDNA stored in E. coli? ‎[1,113 bytes]
  218. (hist) ‎Project Abstract ‎[1,117 bytes]
  219. (hist) ‎Gene Length Histograms ‎[1,119 bytes]
  220. (hist) ‎Amino Acid Sequences ‎[1,120 bytes]
  221. (hist) ‎JP Apr 05 16 ‎[1,124 bytes]
  222. (hist) ‎Davidson Bio113 Protocols ‎[1,124 bytes]
  223. (hist) ‎May 27, 2014 ‎[1,125 bytes]
  224. (hist) ‎TRNA Genes ‎[1,129 bytes]
  225. (hist) ‎Bacteriophytochrome (light-regulated signal transduction histidine kinase) (Claudia M. Carcelen) ‎[1,130 bytes]
  226. (hist) ‎Correlative Data ‎[1,137 bytes]
  227. (hist) ‎Primer Design for the RFP ‎[1,142 bytes]
  228. (hist) ‎PMnt/Lac ‎[1,144 bytes]
  229. (hist) ‎9) Light proton pump ‎[1,167 bytes]
  230. (hist) ‎Notes on the life of Dr. Campbell ‎[1,183 bytes]
  231. (hist) ‎Build XOR Gate ‎[1,188 bytes]
  232. (hist) ‎Eukaryotic Models ‎[1,201 bytes]
  233. (hist) ‎March 2, 2010 ‎[1,203 bytes]
  234. (hist) ‎How does it compare to HTSeq? ‎[1,206 bytes]
  235. (hist) ‎Fragment Purification ‎[1,209 bytes]
  236. (hist) ‎Haloarcula sinaiiensis: Blast Results ‎[1,211 bytes]
  237. (hist) ‎NHE Jan 19 Notes ‎[1,213 bytes]
  238. (hist) ‎Down Syndrome Transcriptome GEDDs ‎[1,217 bytes]
  239. (hist) ‎Melanin Search Page ‎[1,223 bytes]
  240. (hist) ‎Halorhabdus utahensis ‎[1,236 bytes]
  241. (hist) ‎Missing tRNA-trp gene found ‎[1,237 bytes]
  242. (hist) ‎Genome Assembly (gass) ‎[1,241 bytes]
  243. (hist) ‎Electron transfer flavoprotein, alpha subunit (Megan Reilly) ‎[1,245 bytes]
  244. (hist) ‎5) DNA repair mechanisms ‎[1,250 bytes]
  245. (hist) ‎DM Notes 1.28.16 ‎[1,250 bytes]
  246. (hist) ‎Priority List of Topics ‎[1,263 bytes]
  247. (hist) ‎Davidson Missouri W/PLac ‎[1,268 bytes]
  248. (hist) ‎Can we use suppressor tRNAs to encode logical operators (suppressor suppressor logic, SSL)? ‎[1,270 bytes]
  249. (hist) ‎Lux ‎[1,282 bytes]
  250. (hist) ‎January 28, 2016 ‎[1,283 bytes]

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